Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02480 and HMPREF1058_RS02475 are separated by 366 nucleotides HMPREF1058_RS02475 and HMPREF1058_RS02470 are separated by 78 nucleotides
HMPREF1058_RS02480: HMPREF1058_RS02480 - electron transfer flavoprotein subunit beta/FixA family protein, at 172,601 to 173,494
_RS02480
HMPREF1058_RS02475: HMPREF1058_RS02475 - hypothetical protein, at 173,861 to 174,119
_RS02475
HMPREF1058_RS02470: HMPREF1058_RS02470 - hypothetical protein, at 174,198 to 175,262
_RS02470
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 173.057 kb on - strand, within HMPREF1058_RS02480 at 173.168 kb on - strand, within HMPREF1058_RS02480 at 173.235 kb on + strand, within HMPREF1058_RS02480 at 173.236 kb on - strand, within HMPREF1058_RS02480 at 173.238 kb on - strand, within HMPREF1058_RS02480 at 173.475 kb on - strand at 173.477 kb on + strand at 173.496 kb on + strand at 173.497 kb on - strand at 173.507 kb on - strand at 173.516 kb on + strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.580 kb on + strand at 173.634 kb on - strand at 173.643 kb on - strand at 173.655 kb on - strand at 173.710 kb on + strand at 173.807 kb on + strand at 173.837 kb on - strand at 173.925 kb on - strand, within HMPREF1058_RS02475 at 173.959 kb on - strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.005 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.043 kb on - strand, within HMPREF1058_RS02475 at 174.062 kb on + strand, within HMPREF1058_RS02475 at 174.129 kb on + strand at 174.130 kb on - strand at 174.157 kb on - strand at 174.159 kb on + strand at 174.198 kb on - strand at 174.261 kb on - strand at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand at 174.330 kb on - strand, within HMPREF1058_RS02470 at 174.393 kb on - strand, within HMPREF1058_RS02470 at 174.411 kb on - strand, within HMPREF1058_RS02470 at 174.453 kb on - strand, within HMPREF1058_RS02470 at 174.527 kb on + strand, within HMPREF1058_RS02470 at 174.532 kb on + strand, within HMPREF1058_RS02470 at 174.554 kb on + strand, within HMPREF1058_RS02470 at 174.554 kb on + strand, within HMPREF1058_RS02470 at 174.555 kb on - strand, within HMPREF1058_RS02470 at 174.567 kb on + strand, within HMPREF1058_RS02470 at 174.672 kb on + strand, within HMPREF1058_RS02470 at 174.674 kb on + strand, within HMPREF1058_RS02470 at 174.674 kb on + strand, within HMPREF1058_RS02470 at 174.742 kb on + strand, within HMPREF1058_RS02470 at 174.743 kb on - strand, within HMPREF1058_RS02470 at 174.852 kb on - strand, within HMPREF1058_RS02470 at 174.881 kb on + strand, within HMPREF1058_RS02470 at 174.948 kb on + strand, within HMPREF1058_RS02470 at 175.018 kb on - strand, within HMPREF1058_RS02470 at 175.032 kb on + strand, within HMPREF1058_RS02470 at 175.033 kb on - strand, within HMPREF1058_RS02470 at 175.034 kb on + strand, within HMPREF1058_RS02470 at 175.045 kb on + strand, within HMPREF1058_RS02470 at 175.046 kb on - strand, within HMPREF1058_RS02470 at 175.069 kb on - strand, within HMPREF1058_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 173,057 - HMPREF1058_RS02480 0.51 +1.3 173,168 - HMPREF1058_RS02480 0.63 +2.4 173,235 + HMPREF1058_RS02480 0.71 +3.0 173,236 - HMPREF1058_RS02480 0.71 +2.0 173,238 - HMPREF1058_RS02480 0.71 +1.8 173,475 - +2.7 173,477 + +2.2 173,496 + +2.6 173,497 - +1.7 173,507 - -0.6 173,516 + +0.6 173,517 - -0.6 173,517 - +0.1 173,517 - -0.4 173,580 + +0.7 173,634 - -0.9 173,643 - -1.0 173,655 - -1.0 173,710 + -0.3 173,807 + -0.4 173,837 - -0.6 173,925 - HMPREF1058_RS02475 0.25 +0.3 173,959 - HMPREF1058_RS02475 0.38 +0.8 174,004 + HMPREF1058_RS02475 0.55 +0.2 174,004 + HMPREF1058_RS02475 0.55 +1.2 174,005 - HMPREF1058_RS02475 0.56 +1.7 174,009 - HMPREF1058_RS02475 0.57 +1.1 174,009 - HMPREF1058_RS02475 0.57 -1.0 174,043 - HMPREF1058_RS02475 0.70 -0.1 174,062 + HMPREF1058_RS02475 0.78 +0.5 174,129 + -0.3 174,130 - -0.7 174,157 - +2.0 174,159 + -0.0 174,198 - -0.8 174,261 - +1.4 174,313 - HMPREF1058_RS02470 0.11 +0.4 174,313 - HMPREF1058_RS02470 0.11 +0.1 174,313 - -1.1 174,330 - HMPREF1058_RS02470 0.12 -2.1 174,393 - HMPREF1058_RS02470 0.18 -0.3 174,411 - HMPREF1058_RS02470 0.20 -0.2 174,453 - HMPREF1058_RS02470 0.24 +0.9 174,527 + HMPREF1058_RS02470 0.31 -0.9 174,532 + HMPREF1058_RS02470 0.31 -0.6 174,554 + HMPREF1058_RS02470 0.33 +0.4 174,554 + HMPREF1058_RS02470 0.33 -0.7 174,555 - HMPREF1058_RS02470 0.34 -2.0 174,567 + HMPREF1058_RS02470 0.35 -0.7 174,672 + HMPREF1058_RS02470 0.45 -0.1 174,674 + HMPREF1058_RS02470 0.45 +0.4 174,674 + HMPREF1058_RS02470 0.45 +0.0 174,742 + HMPREF1058_RS02470 0.51 +0.5 174,743 - HMPREF1058_RS02470 0.51 +1.0 174,852 - HMPREF1058_RS02470 0.61 -0.5 174,881 + HMPREF1058_RS02470 0.64 -0.1 174,948 + HMPREF1058_RS02470 0.70 +0.5 175,018 - HMPREF1058_RS02470 0.77 -0.0 175,032 + HMPREF1058_RS02470 0.78 +0.3 175,033 - HMPREF1058_RS02470 0.78 +0.0 175,034 + HMPREF1058_RS02470 0.78 -0.0 175,045 + HMPREF1058_RS02470 0.80 +1.5 175,046 - HMPREF1058_RS02470 0.80 -0.9 175,069 - HMPREF1058_RS02470 0.82 +0.4
Or see this region's nucleotide sequence