Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02150 and HMPREF1058_RS02145 overlap by 8 nucleotides HMPREF1058_RS02145 and HMPREF1058_RS02140 are separated by 161 nucleotides HMPREF1058_RS02140 and HMPREF1058_RS02135 are separated by 234 nucleotides
HMPREF1058_RS02150: HMPREF1058_RS02150 - DUF3440 domain-containing protein, at 270,509 to 271,810
_RS02150
HMPREF1058_RS02145: HMPREF1058_RS02145 - hypothetical protein, at 271,803 to 272,195
_RS02145
HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694
_RS02140
HMPREF1058_RS02135: HMPREF1058_RS02135 - phosphoenolpyruvate synthase, at 273,929 to 276,886
_RS02135
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.399 kb on - strand, within HMPREF1058_RS02150 at 271.463 kb on - strand, within HMPREF1058_RS02150 at 271.486 kb on - strand, within HMPREF1058_RS02150 at 271.498 kb on + strand, within HMPREF1058_RS02150 at 271.551 kb on - strand, within HMPREF1058_RS02150 at 271.551 kb on - strand, within HMPREF1058_RS02150 at 271.585 kb on - strand, within HMPREF1058_RS02150 at 271.614 kb on + strand, within HMPREF1058_RS02150 at 271.626 kb on + strand, within HMPREF1058_RS02150 at 271.627 kb on - strand, within HMPREF1058_RS02150 at 271.629 kb on - strand, within HMPREF1058_RS02150 at 271.629 kb on - strand, within HMPREF1058_RS02150 at 271.666 kb on - strand, within HMPREF1058_RS02150 at 271.672 kb on + strand, within HMPREF1058_RS02150 at 271.677 kb on - strand, within HMPREF1058_RS02150 at 271.723 kb on - strand at 271.726 kb on + strand at 271.793 kb on - strand at 271.886 kb on + strand, within HMPREF1058_RS02145 at 271.916 kb on - strand, within HMPREF1058_RS02145 at 271.917 kb on + strand, within HMPREF1058_RS02145 at 271.984 kb on + strand, within HMPREF1058_RS02145 at 271.985 kb on - strand, within HMPREF1058_RS02145 at 271.985 kb on - strand, within HMPREF1058_RS02145 at 271.988 kb on - strand, within HMPREF1058_RS02145 at 271.988 kb on - strand, within HMPREF1058_RS02145 at 272.065 kb on + strand, within HMPREF1058_RS02145 at 272.157 kb on + strand at 272.179 kb on - strand at 272.200 kb on + strand at 272.237 kb on + strand at 272.253 kb on + strand at 272.306 kb on - strand at 272.306 kb on - strand at 272.319 kb on - strand at 272.347 kb on + strand at 272.347 kb on + strand at 272.390 kb on + strand at 272.428 kb on - strand at 272.435 kb on - strand at 272.435 kb on - strand at 272.457 kb on + strand at 272.489 kb on - strand at 272.489 kb on - strand at 272.498 kb on + strand, within HMPREF1058_RS02140 at 272.503 kb on + strand, within HMPREF1058_RS02140 at 272.510 kb on + strand, within HMPREF1058_RS02140 at 272.569 kb on + strand, within HMPREF1058_RS02140 at 272.570 kb on - strand, within HMPREF1058_RS02140 at 272.573 kb on + strand, within HMPREF1058_RS02140 at 272.607 kb on + strand, within HMPREF1058_RS02140 at 272.608 kb on - strand, within HMPREF1058_RS02140 at 272.608 kb on - strand, within HMPREF1058_RS02140 at 272.660 kb on - strand, within HMPREF1058_RS02140 at 272.704 kb on + strand, within HMPREF1058_RS02140 at 272.724 kb on - strand, within HMPREF1058_RS02140 at 272.756 kb on - strand, within HMPREF1058_RS02140 at 272.756 kb on - strand, within HMPREF1058_RS02140 at 272.760 kb on - strand, within HMPREF1058_RS02140 at 272.760 kb on - strand, within HMPREF1058_RS02140 at 272.765 kb on - strand, within HMPREF1058_RS02140 at 272.803 kb on + strand, within HMPREF1058_RS02140 at 272.828 kb on + strand, within HMPREF1058_RS02140 at 272.901 kb on + strand, within HMPREF1058_RS02140 at 272.901 kb on + strand, within HMPREF1058_RS02140 at 272.902 kb on - strand, within HMPREF1058_RS02140 at 272.905 kb on + strand, within HMPREF1058_RS02140 at 272.905 kb on + strand, within HMPREF1058_RS02140 at 272.959 kb on + strand, within HMPREF1058_RS02140 at 273.016 kb on + strand, within HMPREF1058_RS02140 at 273.137 kb on - strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.174 kb on + strand, within HMPREF1058_RS02140 at 273.175 kb on - strand, within HMPREF1058_RS02140 at 273.175 kb on - strand, within HMPREF1058_RS02140 at 273.179 kb on + strand, within HMPREF1058_RS02140 at 273.337 kb on + strand, within HMPREF1058_RS02140 at 273.405 kb on - strand, within HMPREF1058_RS02140 at 273.473 kb on + strand, within HMPREF1058_RS02140 at 273.529 kb on + strand, within HMPREF1058_RS02140 at 273.591 kb on + strand at 273.591 kb on + strand at 273.591 kb on + strand at 273.595 kb on + strand at 273.595 kb on + strand at 273.596 kb on - strand at 273.636 kb on + strand at 273.698 kb on + strand at 273.699 kb on - strand at 273.750 kb on - strand at 273.864 kb on - strand at 273.881 kb on - strand at 273.960 kb on - strand at 274.042 kb on + strand at 274.088 kb on + strand at 274.089 kb on - strand at 274.090 kb on + strand at 274.171 kb on + strand at 274.171 kb on + strand at 274.258 kb on + strand, within HMPREF1058_RS02135 at 274.259 kb on - strand, within HMPREF1058_RS02135 at 274.337 kb on + strand, within HMPREF1058_RS02135 at 274.372 kb on - strand, within HMPREF1058_RS02135 at 274.378 kb on + strand, within HMPREF1058_RS02135 at 274.379 kb on - strand, within HMPREF1058_RS02135 at 274.393 kb on - strand, within HMPREF1058_RS02135 at 274.629 kb on - strand, within HMPREF1058_RS02135 at 274.634 kb on - strand, within HMPREF1058_RS02135 at 274.634 kb on - strand, within HMPREF1058_RS02135 at 274.653 kb on + strand, within HMPREF1058_RS02135 at 274.654 kb on - strand, within HMPREF1058_RS02135 at 274.654 kb on - strand, within HMPREF1058_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 271,399 - HMPREF1058_RS02150 0.68 +0.8 271,463 - HMPREF1058_RS02150 0.73 -0.1 271,486 - HMPREF1058_RS02150 0.75 -0.2 271,498 + HMPREF1058_RS02150 0.76 -0.5 271,551 - HMPREF1058_RS02150 0.80 +1.0 271,551 - HMPREF1058_RS02150 0.80 -2.0 271,585 - HMPREF1058_RS02150 0.83 -0.4 271,614 + HMPREF1058_RS02150 0.85 +1.6 271,626 + HMPREF1058_RS02150 0.86 +0.7 271,627 - HMPREF1058_RS02150 0.86 +2.4 271,629 - HMPREF1058_RS02150 0.86 -0.2 271,629 - HMPREF1058_RS02150 0.86 -0.3 271,666 - HMPREF1058_RS02150 0.89 +0.0 271,672 + HMPREF1058_RS02150 0.89 -0.1 271,677 - HMPREF1058_RS02150 0.90 -0.6 271,723 - +0.2 271,726 + +1.0 271,793 - +0.1 271,886 + HMPREF1058_RS02145 0.21 -0.2 271,916 - HMPREF1058_RS02145 0.29 +0.7 271,917 + HMPREF1058_RS02145 0.29 -1.5 271,984 + HMPREF1058_RS02145 0.46 -0.6 271,985 - HMPREF1058_RS02145 0.46 -0.1 271,985 - HMPREF1058_RS02145 0.46 +0.3 271,988 - HMPREF1058_RS02145 0.47 +0.0 271,988 - HMPREF1058_RS02145 0.47 +0.3 272,065 + HMPREF1058_RS02145 0.67 -1.0 272,157 + -1.8 272,179 - -0.5 272,200 + -0.8 272,237 + -1.6 272,253 + -0.8 272,306 - +0.0 272,306 - +0.2 272,319 - -0.3 272,347 + -0.4 272,347 + -0.8 272,390 + +0.7 272,428 - +1.2 272,435 - +1.2 272,435 - +0.8 272,457 + +1.7 272,489 - +1.7 272,489 - +0.7 272,498 + HMPREF1058_RS02140 0.11 +0.6 272,503 + HMPREF1058_RS02140 0.11 +2.0 272,510 + HMPREF1058_RS02140 0.11 +0.6 272,569 + HMPREF1058_RS02140 0.16 +0.6 272,570 - HMPREF1058_RS02140 0.16 +1.9 272,573 + HMPREF1058_RS02140 0.16 +1.5 272,607 + HMPREF1058_RS02140 0.19 +1.5 272,608 - HMPREF1058_RS02140 0.19 +0.9 272,608 - HMPREF1058_RS02140 0.19 +1.0 272,660 - HMPREF1058_RS02140 0.23 +1.5 272,704 + HMPREF1058_RS02140 0.26 +1.7 272,724 - HMPREF1058_RS02140 0.27 +1.3 272,756 - HMPREF1058_RS02140 0.30 +0.8 272,756 - HMPREF1058_RS02140 0.30 +2.3 272,760 - HMPREF1058_RS02140 0.30 -0.4 272,760 - HMPREF1058_RS02140 0.30 +0.3 272,765 - HMPREF1058_RS02140 0.30 +0.9 272,803 + HMPREF1058_RS02140 0.33 +1.0 272,828 + HMPREF1058_RS02140 0.35 +1.3 272,901 + HMPREF1058_RS02140 0.41 +0.0 272,901 + HMPREF1058_RS02140 0.41 +0.1 272,902 - HMPREF1058_RS02140 0.41 +0.8 272,905 + HMPREF1058_RS02140 0.41 +1.3 272,905 + HMPREF1058_RS02140 0.41 +1.3 272,959 + HMPREF1058_RS02140 0.45 -0.6 273,016 + HMPREF1058_RS02140 0.49 -0.8 273,137 - HMPREF1058_RS02140 0.58 -0.1 273,174 + HMPREF1058_RS02140 0.61 +0.6 273,174 + HMPREF1058_RS02140 0.61 +2.0 273,174 + HMPREF1058_RS02140 0.61 +1.1 273,175 - HMPREF1058_RS02140 0.61 +0.4 273,175 - HMPREF1058_RS02140 0.61 +0.7 273,179 + HMPREF1058_RS02140 0.61 +1.4 273,337 + HMPREF1058_RS02140 0.73 +1.3 273,405 - HMPREF1058_RS02140 0.78 -0.4 273,473 + HMPREF1058_RS02140 0.83 +0.4 273,529 + HMPREF1058_RS02140 0.88 +1.5 273,591 + +1.5 273,591 + +1.5 273,591 + +1.0 273,595 + +1.4 273,595 + +0.6 273,596 - +1.3 273,636 + +0.4 273,698 + +1.0 273,699 - +1.4 273,750 - -0.1 273,864 - -1.0 273,881 - -0.2 273,960 - -1.3 274,042 + -1.1 274,088 + +0.4 274,089 - -1.5 274,090 + -1.1 274,171 + +1.0 274,171 + +0.3 274,258 + HMPREF1058_RS02135 0.11 -0.6 274,259 - HMPREF1058_RS02135 0.11 -2.9 274,337 + HMPREF1058_RS02135 0.14 -0.2 274,372 - HMPREF1058_RS02135 0.15 -2.0 274,378 + HMPREF1058_RS02135 0.15 -0.3 274,379 - HMPREF1058_RS02135 0.15 -1.3 274,393 - HMPREF1058_RS02135 0.16 +0.2 274,629 - HMPREF1058_RS02135 0.24 -2.5 274,634 - HMPREF1058_RS02135 0.24 -1.0 274,634 - HMPREF1058_RS02135 0.24 -2.5 274,653 + HMPREF1058_RS02135 0.24 +1.3 274,654 - HMPREF1058_RS02135 0.25 -1.5 274,654 - HMPREF1058_RS02135 0.25 -2.2
Or see this region's nucleotide sequence