Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01860 and HMPREF1058_RS01855 are separated by 18 nucleotides HMPREF1058_RS01855 and HMPREF1058_RS01850 overlap by 20 nucleotides HMPREF1058_RS01850 and HMPREF1058_RS21710 are separated by 16 nucleotides
HMPREF1058_RS01860: HMPREF1058_RS01860 - hypothetical protein, at 29,156 to 30,184
_RS01860
HMPREF1058_RS01855: HMPREF1058_RS01855 - hypothetical protein, at 30,203 to 30,496
_RS01855
HMPREF1058_RS01850: HMPREF1058_RS01850 - hypothetical protein, at 30,477 to 30,896
_RS01850
HMPREF1058_RS21710: HMPREF1058_RS21710 - hypothetical protein, at 30,913 to 31,190
_RS21710
Position (kb) 29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.156 kb on + strand at 28.156 kb on + strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.220 kb on - strand at 28.221 kb on + strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.222 kb on - strand at 28.310 kb on + strand at 28.460 kb on + strand at 28.461 kb on - strand at 28.646 kb on - strand at 28.646 kb on - strand at 28.646 kb on - strand at 29.243 kb on + strand at 29.286 kb on + strand, within HMPREF1058_RS01860 at 29.440 kb on - strand, within HMPREF1058_RS01860 at 29.504 kb on + strand, within HMPREF1058_RS01860 at 29.504 kb on + strand, within HMPREF1058_RS01860 at 29.505 kb on - strand, within HMPREF1058_RS01860 at 29.505 kb on - strand, within HMPREF1058_RS01860 at 29.583 kb on - strand, within HMPREF1058_RS01860 at 29.753 kb on - strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.851 kb on + strand, within HMPREF1058_RS01860 at 29.918 kb on - strand, within HMPREF1058_RS01860 at 29.976 kb on - strand, within HMPREF1058_RS01860 at 30.035 kb on - strand, within HMPREF1058_RS01860 at 30.048 kb on + strand, within HMPREF1058_RS01860 at 30.055 kb on - strand, within HMPREF1058_RS01860 at 30.095 kb on + strand at 30.284 kb on + strand, within HMPREF1058_RS01855 at 30.285 kb on - strand at 30.300 kb on - strand, within HMPREF1058_RS01855 at 30.309 kb on + strand, within HMPREF1058_RS01855 at 30.452 kb on + strand at 30.452 kb on + strand, within HMPREF1058_RS01855 at 30.453 kb on - strand, within HMPREF1058_RS01855 at 30.488 kb on - strand at 30.490 kb on - strand at 30.494 kb on + strand at 30.494 kb on + strand at 30.495 kb on - strand at 30.540 kb on - strand, within HMPREF1058_RS01850 at 30.566 kb on - strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.617 kb on + strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.666 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.733 kb on - strand at 30.733 kb on - strand, within HMPREF1058_RS01850 at 30.742 kb on - strand, within HMPREF1058_RS01850 at 30.795 kb on + strand, within HMPREF1058_RS01850 at 30.797 kb on + strand, within HMPREF1058_RS01850 at 30.849 kb on + strand, within HMPREF1058_RS01850 at 30.885 kb on + strand at 30.885 kb on + strand at 30.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 28,156 + +0.4 28,156 + +1.4 28,220 - +0.6 28,220 - -1.8 28,220 - +2.0 28,220 - -1.7 28,220 - +0.4 28,220 - -0.2 28,220 - -0.5 28,221 + +0.4 28,222 - -0.1 28,222 - +0.6 28,222 - +0.4 28,310 + +0.2 28,460 + -0.8 28,461 - -0.5 28,646 - +0.7 28,646 - -1.8 28,646 - -0.2 29,243 + +0.0 29,286 + HMPREF1058_RS01860 0.13 +0.7 29,440 - HMPREF1058_RS01860 0.28 +0.6 29,504 + HMPREF1058_RS01860 0.34 -0.5 29,504 + HMPREF1058_RS01860 0.34 +1.1 29,505 - HMPREF1058_RS01860 0.34 -1.4 29,505 - HMPREF1058_RS01860 0.34 +2.2 29,583 - HMPREF1058_RS01860 0.41 +0.3 29,753 - HMPREF1058_RS01860 0.58 -1.5 29,851 + HMPREF1058_RS01860 0.68 +0.0 29,851 + HMPREF1058_RS01860 0.68 +2.0 29,851 + HMPREF1058_RS01860 0.68 +0.7 29,918 - HMPREF1058_RS01860 0.74 +2.0 29,976 - HMPREF1058_RS01860 0.80 -1.3 30,035 - HMPREF1058_RS01860 0.85 +1.4 30,048 + HMPREF1058_RS01860 0.87 -1.4 30,055 - HMPREF1058_RS01860 0.87 +1.1 30,095 + -0.5 30,284 + HMPREF1058_RS01855 0.28 +0.1 30,285 - +0.0 30,300 - HMPREF1058_RS01855 0.33 -0.2 30,309 + HMPREF1058_RS01855 0.36 +1.8 30,452 + +0.2 30,452 + HMPREF1058_RS01855 0.85 -0.2 30,453 - HMPREF1058_RS01855 0.85 +0.5 30,488 - +0.5 30,490 - -1.1 30,494 + +0.8 30,494 + -0.3 30,495 - -1.1 30,540 - HMPREF1058_RS01850 0.15 -1.0 30,566 - HMPREF1058_RS01850 0.21 -2.0 30,617 + HMPREF1058_RS01850 0.33 -1.4 30,617 + HMPREF1058_RS01850 0.33 +0.3 30,666 - HMPREF1058_RS01850 0.45 -0.9 30,666 - HMPREF1058_RS01850 0.45 +0.1 30,733 - HMPREF1058_RS01850 0.61 +0.1 30,733 - -0.8 30,733 - HMPREF1058_RS01850 0.61 -0.8 30,742 - HMPREF1058_RS01850 0.63 +0.1 30,795 + HMPREF1058_RS01850 0.76 -0.5 30,797 + HMPREF1058_RS01850 0.76 +0.5 30,849 + HMPREF1058_RS01850 0.89 +0.3 30,885 + -0.0 30,885 + +0.2 30,928 - +1.3
Or see this region's nucleotide sequence