Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01625 and HMPREF1058_RS01620 are separated by 133 nucleotides HMPREF1058_RS01620 and HMPREF1058_RS01615 are separated by 20 nucleotides HMPREF1058_RS01615 and HMPREF1058_RS01610 are separated by 24 nucleotides HMPREF1058_RS01610 and HMPREF1058_RS01605 are separated by 88 nucleotides HMPREF1058_RS01605 and HMPREF1058_RS01600 are separated by 153 nucleotides
HMPREF1058_RS01625: HMPREF1058_RS01625 - hypothetical protein, at 81,058 to 81,276
_RS01625
HMPREF1058_RS01620: HMPREF1058_RS01620 - tRNA-Lys, at 81,410 to 81,482
_RS01620
HMPREF1058_RS01615: HMPREF1058_RS01615 - tRNA-Lys, at 81,503 to 81,575
_RS01615
HMPREF1058_RS01610: HMPREF1058_RS01610 - tRNA-Lys, at 81,600 to 81,672
_RS01610
HMPREF1058_RS01605: HMPREF1058_RS01605 - MBL fold metallo-hydrolase, at 81,761 to 82,564
_RS01605
HMPREF1058_RS01600: HMPREF1058_RS01600 - winged helix-turn-helix transcriptional regulator, at 82,718 to 83,680
_RS01600
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.826 kb on - strand at 80.869 kb on - strand at 80.873 kb on - strand at 80.939 kb on + strand at 80.983 kb on - strand at 81.026 kb on - strand at 81.082 kb on - strand, within HMPREF1058_RS01625 at 81.123 kb on - strand, within HMPREF1058_RS01625 at 81.147 kb on + strand, within HMPREF1058_RS01625 at 81.148 kb on - strand, within HMPREF1058_RS01625 at 81.153 kb on - strand, within HMPREF1058_RS01625 at 81.201 kb on + strand, within HMPREF1058_RS01625 at 81.274 kb on + strand at 81.275 kb on - strand at 81.279 kb on + strand at 81.375 kb on + strand at 81.462 kb on + strand, within HMPREF1058_RS01620 at 81.474 kb on + strand, within HMPREF1058_RS01620 at 81.475 kb on - strand at 81.540 kb on - strand, within HMPREF1058_RS01615 at 81.568 kb on - strand at 81.568 kb on - strand at 81.664 kb on + strand, within HMPREF1058_RS01610 at 81.801 kb on - strand at 81.902 kb on - strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 82.001 kb on - strand, within HMPREF1058_RS01605 at 82.084 kb on + strand, within HMPREF1058_RS01605 at 82.085 kb on - strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.089 kb on - strand, within HMPREF1058_RS01605 at 82.090 kb on + strand, within HMPREF1058_RS01605 at 82.091 kb on - strand, within HMPREF1058_RS01605 at 82.092 kb on + strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.157 kb on - strand, within HMPREF1058_RS01605 at 82.161 kb on - strand, within HMPREF1058_RS01605 at 82.260 kb on - strand, within HMPREF1058_RS01605 at 82.314 kb on - strand, within HMPREF1058_RS01605 at 82.460 kb on - strand, within HMPREF1058_RS01605 at 82.547 kb on + strand at 82.624 kb on + strand at 82.626 kb on + strand at 82.626 kb on + strand at 82.758 kb on - strand at 82.956 kb on - strand, within HMPREF1058_RS01600 at 82.959 kb on + strand, within HMPREF1058_RS01600 at 83.090 kb on + strand, within HMPREF1058_RS01600 at 83.119 kb on - strand, within HMPREF1058_RS01600 at 83.160 kb on - strand at 83.160 kb on - strand, within HMPREF1058_RS01600 at 83.163 kb on - strand, within HMPREF1058_RS01600 at 83.176 kb on + strand, within HMPREF1058_RS01600 at 83.181 kb on + strand, within HMPREF1058_RS01600 at 83.238 kb on + strand, within HMPREF1058_RS01600 at 83.246 kb on - strand, within HMPREF1058_RS01600 at 83.327 kb on + strand, within HMPREF1058_RS01600 at 83.336 kb on + strand, within HMPREF1058_RS01600 at 83.398 kb on - strand, within HMPREF1058_RS01600 at 83.423 kb on + strand, within HMPREF1058_RS01600 at 83.468 kb on - strand, within HMPREF1058_RS01600 at 83.468 kb on - strand, within HMPREF1058_RS01600 at 83.508 kb on + strand, within HMPREF1058_RS01600 at 83.509 kb on - strand, within HMPREF1058_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 80,826 - +0.1 80,869 - -0.5 80,873 - -1.1 80,939 + -0.6 80,983 - -0.1 81,026 - +1.1 81,082 - HMPREF1058_RS01625 0.11 +0.1 81,123 - HMPREF1058_RS01625 0.30 +0.6 81,147 + HMPREF1058_RS01625 0.41 -1.2 81,148 - HMPREF1058_RS01625 0.41 -1.0 81,153 - HMPREF1058_RS01625 0.43 +1.0 81,201 + HMPREF1058_RS01625 0.65 -1.8 81,274 + -1.4 81,275 - +0.2 81,279 + -1.4 81,375 + -1.2 81,462 + HMPREF1058_RS01620 0.71 +0.4 81,474 + HMPREF1058_RS01620 0.88 -1.0 81,475 - -1.2 81,540 - HMPREF1058_RS01615 0.51 +0.6 81,568 - +0.6 81,568 - -0.4 81,664 + HMPREF1058_RS01610 0.88 +0.5 81,801 - +0.5 81,902 - HMPREF1058_RS01605 0.18 +2.2 81,979 + HMPREF1058_RS01605 0.27 +1.6 81,979 + HMPREF1058_RS01605 0.27 +0.1 81,979 + HMPREF1058_RS01605 0.27 -0.0 82,001 - HMPREF1058_RS01605 0.30 +0.2 82,084 + HMPREF1058_RS01605 0.40 +0.1 82,085 - HMPREF1058_RS01605 0.40 -1.1 82,088 + HMPREF1058_RS01605 0.41 +0.2 82,088 + HMPREF1058_RS01605 0.41 -0.9 82,088 + HMPREF1058_RS01605 0.41 +2.0 82,089 - HMPREF1058_RS01605 0.41 +0.3 82,090 + HMPREF1058_RS01605 0.41 +1.0 82,091 - HMPREF1058_RS01605 0.41 -0.5 82,092 + HMPREF1058_RS01605 0.41 +1.0 82,093 - HMPREF1058_RS01605 0.41 -0.5 82,093 - HMPREF1058_RS01605 0.41 -0.1 82,093 - HMPREF1058_RS01605 0.41 +0.4 82,157 - HMPREF1058_RS01605 0.49 +0.2 82,161 - HMPREF1058_RS01605 0.50 +1.3 82,260 - HMPREF1058_RS01605 0.62 +0.5 82,314 - HMPREF1058_RS01605 0.69 +1.0 82,460 - HMPREF1058_RS01605 0.87 +0.7 82,547 + +1.0 82,624 + +1.0 82,626 + +0.0 82,626 + -0.1 82,758 - -0.3 82,956 - HMPREF1058_RS01600 0.25 +0.5 82,959 + HMPREF1058_RS01600 0.25 +1.5 83,090 + HMPREF1058_RS01600 0.39 -1.1 83,119 - HMPREF1058_RS01600 0.42 -0.0 83,160 - -0.8 83,160 - HMPREF1058_RS01600 0.46 +0.0 83,163 - HMPREF1058_RS01600 0.46 -0.2 83,176 + HMPREF1058_RS01600 0.48 -0.8 83,181 + HMPREF1058_RS01600 0.48 +0.1 83,238 + HMPREF1058_RS01600 0.54 +0.6 83,246 - HMPREF1058_RS01600 0.55 +1.3 83,327 + HMPREF1058_RS01600 0.63 -0.5 83,336 + HMPREF1058_RS01600 0.64 -0.3 83,398 - HMPREF1058_RS01600 0.71 +1.0 83,423 + HMPREF1058_RS01600 0.73 +1.4 83,468 - HMPREF1058_RS01600 0.78 -1.3 83,468 - HMPREF1058_RS01600 0.78 -1.4 83,508 + HMPREF1058_RS01600 0.82 -1.0 83,509 - HMPREF1058_RS01600 0.82 +1.3
Or see this region's nucleotide sequence