Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01400

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01405 and HMPREF1058_RS01400 overlap by 4 nucleotidesHMPREF1058_RS01400 and HMPREF1058_RS01395 overlap by 1 nucleotides HMPREF1058_RS01405: HMPREF1058_RS01405 - cobyrinate a,c-diamide synthase, at 136,866 to 138,194 _RS01405 HMPREF1058_RS01400: HMPREF1058_RS01400 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 138,191 to 138,766 _RS01400 HMPREF1058_RS01395: HMPREF1058_RS01395 - cobyric acid synthase, at 138,766 to 140,256 _RS01395 Position (kb) 138 139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 137.213 kb on + strand, within HMPREF1058_RS01405at 137.216 kb on - strand, within HMPREF1058_RS01405at 137.216 kb on - strand, within HMPREF1058_RS01405at 137.218 kb on + strand, within HMPREF1058_RS01405at 137.231 kb on + strand, within HMPREF1058_RS01405at 137.232 kb on - strand, within HMPREF1058_RS01405at 137.538 kb on - strand, within HMPREF1058_RS01405at 137.555 kb on + strand, within HMPREF1058_RS01405at 137.651 kb on + strand, within HMPREF1058_RS01405at 137.655 kb on + strand, within HMPREF1058_RS01405at 137.656 kb on - strand, within HMPREF1058_RS01405at 137.656 kb on - strand, within HMPREF1058_RS01405at 137.657 kb on + strand, within HMPREF1058_RS01405at 137.658 kb on - strand, within HMPREF1058_RS01405at 137.669 kb on - strand, within HMPREF1058_RS01405at 137.697 kb on - strand, within HMPREF1058_RS01405at 137.697 kb on - strand, within HMPREF1058_RS01405at 137.714 kb on - strand, within HMPREF1058_RS01405at 137.715 kb on + strand, within HMPREF1058_RS01405at 137.748 kb on + strand, within HMPREF1058_RS01405at 137.789 kb on - strand, within HMPREF1058_RS01405at 137.826 kb on + strand, within HMPREF1058_RS01405at 137.974 kb on + strand, within HMPREF1058_RS01405at 137.975 kb on - strand, within HMPREF1058_RS01405at 138.116 kb on + strandat 138.116 kb on + strandat 138.117 kb on - strandat 138.121 kb on - strandat 138.143 kb on + strandat 138.144 kb on - strandat 138.144 kb on - strandat 138.151 kb on + strandat 138.152 kb on - strandat 138.292 kb on + strand, within HMPREF1058_RS01400at 138.293 kb on - strand, within HMPREF1058_RS01400at 138.293 kb on - strand, within HMPREF1058_RS01400at 138.336 kb on + strand, within HMPREF1058_RS01400at 138.517 kb on + strand, within HMPREF1058_RS01400at 138.518 kb on - strand, within HMPREF1058_RS01400at 138.641 kb on - strand, within HMPREF1058_RS01400at 138.744 kb on - strandat 138.956 kb on + strand, within HMPREF1058_RS01395at 139.043 kb on + strand, within HMPREF1058_RS01395at 139.158 kb on + strand, within HMPREF1058_RS01395at 139.170 kb on - strand, within HMPREF1058_RS01395at 139.188 kb on + strand, within HMPREF1058_RS01395at 139.188 kb on + strand, within HMPREF1058_RS01395at 139.292 kb on + strand, within HMPREF1058_RS01395at 139.292 kb on + strand, within HMPREF1058_RS01395at 139.292 kb on + strand, within HMPREF1058_RS01395at 139.307 kb on - strand, within HMPREF1058_RS01395at 139.323 kb on - strand, within HMPREF1058_RS01395at 139.431 kb on + strand, within HMPREF1058_RS01395at 139.431 kb on + strand, within HMPREF1058_RS01395at 139.451 kb on + strand, within HMPREF1058_RS01395at 139.456 kb on + strand, within HMPREF1058_RS01395at 139.456 kb on + strand, within HMPREF1058_RS01395at 139.456 kb on + strand, within HMPREF1058_RS01395at 139.467 kb on + strand, within HMPREF1058_RS01395at 139.467 kb on + strand, within HMPREF1058_RS01395at 139.469 kb on + strand, within HMPREF1058_RS01395at 139.470 kb on - strand, within HMPREF1058_RS01395at 139.506 kb on + strand, within HMPREF1058_RS01395at 139.619 kb on - strand, within HMPREF1058_RS01395at 139.622 kb on - strand, within HMPREF1058_RS01395at 139.659 kb on + strand, within HMPREF1058_RS01395

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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137,213 + HMPREF1058_RS01405 0.26 -3.9
137,216 - HMPREF1058_RS01405 0.26 -0.4
137,216 - HMPREF1058_RS01405 0.26 -1.3
137,218 + HMPREF1058_RS01405 0.26 -1.5
137,231 + HMPREF1058_RS01405 0.27 +0.0
137,232 - HMPREF1058_RS01405 0.28 -0.5
137,538 - HMPREF1058_RS01405 0.51 -0.3
137,555 + HMPREF1058_RS01405 0.52 +2.0
137,651 + HMPREF1058_RS01405 0.59 +2.0
137,655 + HMPREF1058_RS01405 0.59 +0.5
137,656 - HMPREF1058_RS01405 0.59 -0.3
137,656 - HMPREF1058_RS01405 0.59 -0.5
137,657 + HMPREF1058_RS01405 0.60 -0.9
137,658 - HMPREF1058_RS01405 0.60 -0.8
137,669 - HMPREF1058_RS01405 0.60 -1.0
137,697 - HMPREF1058_RS01405 0.63 +0.6
137,697 - HMPREF1058_RS01405 0.63 -1.3
137,714 - HMPREF1058_RS01405 0.64 -0.3
137,715 + HMPREF1058_RS01405 0.64 -1.7
137,748 + HMPREF1058_RS01405 0.66 -0.9
137,789 - HMPREF1058_RS01405 0.69 -1.1
137,826 + HMPREF1058_RS01405 0.72 -1.4
137,974 + HMPREF1058_RS01405 0.83 -0.3
137,975 - HMPREF1058_RS01405 0.83 +3.0
138,116 + -1.2
138,116 + -0.3
138,117 - +1.3
138,121 - -0.9
138,143 + +0.6
138,144 - -1.5
138,144 - -1.9
138,151 + +0.8
138,152 - -1.0
138,292 + HMPREF1058_RS01400 0.18 +0.8
138,293 - HMPREF1058_RS01400 0.18 +0.7
138,293 - HMPREF1058_RS01400 0.18 +0.3
138,336 + HMPREF1058_RS01400 0.25 +0.6
138,517 + HMPREF1058_RS01400 0.57 +1.3
138,518 - HMPREF1058_RS01400 0.57 -0.0
138,641 - HMPREF1058_RS01400 0.78 -0.2
138,744 - -1.0
138,956 + HMPREF1058_RS01395 0.13 +1.4
139,043 + HMPREF1058_RS01395 0.19 -0.7
139,158 + HMPREF1058_RS01395 0.26 -3.5
139,170 - HMPREF1058_RS01395 0.27 -0.2
139,188 + HMPREF1058_RS01395 0.28 +0.3
139,188 + HMPREF1058_RS01395 0.28 -0.5
139,292 + HMPREF1058_RS01395 0.35 +0.6
139,292 + HMPREF1058_RS01395 0.35 +0.9
139,292 + HMPREF1058_RS01395 0.35 +0.0
139,307 - HMPREF1058_RS01395 0.36 -0.7
139,323 - HMPREF1058_RS01395 0.37 -0.8
139,431 + HMPREF1058_RS01395 0.45 -1.5
139,431 + HMPREF1058_RS01395 0.45 -0.8
139,451 + HMPREF1058_RS01395 0.46 -0.4
139,456 + HMPREF1058_RS01395 0.46 -1.0
139,456 + HMPREF1058_RS01395 0.46 -1.5
139,456 + HMPREF1058_RS01395 0.46 +0.0
139,467 + HMPREF1058_RS01395 0.47 -0.8
139,467 + HMPREF1058_RS01395 0.47 +0.0
139,469 + HMPREF1058_RS01395 0.47 -0.2
139,470 - HMPREF1058_RS01395 0.47 +0.8
139,506 + HMPREF1058_RS01395 0.50 +0.0
139,619 - HMPREF1058_RS01395 0.57 -0.5
139,622 - HMPREF1058_RS01395 0.57 -1.1
139,659 + HMPREF1058_RS01395 0.60 -1.3

Or see this region's nucleotide sequence