Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00695

Experiment: Xylan from corn core 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corn core 2.5 mg/ml (C)
10,805	-		HMPREF1058_RS00700	0.19	-3.6
10,812	+		HMPREF1058_RS00700	0.20	-2.4
10,812	+		HMPREF1058_RS00700	0.20	-3.0
10,849	+		HMPREF1058_RS00700	0.24	-0.6
10,956	+		HMPREF1058_RS00700	0.34	-4.0
10,956	+		HMPREF1058_RS00700	0.34	-2.9
10,957	-		HMPREF1058_RS00700	0.34	-4.5
11,119	+		HMPREF1058_RS00700	0.49	-2.9
11,121	+		HMPREF1058_RS00700	0.50	-1.3
11,121	+		HMPREF1058_RS00700	0.50	-3.4
11,162	+		HMPREF1058_RS00700	0.53	-3.2
11,164	+		HMPREF1058_RS00700	0.54	-1.6
11,165	-		HMPREF1058_RS00700	0.54	-2.0
11,341	-		HMPREF1058_RS00700	0.70	-1.6
11,378	+		HMPREF1058_RS00700	0.74	-3.1
11,382	-		HMPREF1058_RS00700	0.74	-3.3
11,458	+		HMPREF1058_RS00700	0.82	-1.8
11,458	+		HMPREF1058_RS00700	0.82	-4.1
11,459	-		HMPREF1058_RS00700	0.82	-2.9
11,536	+		HMPREF1058_RS00700	0.89	+0.8
11,566	-				-0.8
11,615	-				-2.1
11,667	+				-0.1
11,667	+				+0.1
11,672	-				+0.3
11,691	+				-0.4
11,743	+				+0.6
11,852	-				-0.7
11,852	-				+2.3
11,852	-				+0.6
11,852	-				-0.3
11,854	-				+0.2
11,854	-				+1.0
11,859	+				-0.0
11,876	+		HMPREF1058_RS00695	0.10	-0.2
11,877	-		HMPREF1058_RS00695	0.10	+1.3
11,877	-		HMPREF1058_RS00695	0.10	+0.4
11,928	-		HMPREF1058_RS00695	0.14	+0.4
12,056	+		HMPREF1058_RS00695	0.23	+0.8
12,056	+		HMPREF1058_RS00695	0.23	+0.3
12,057	-		HMPREF1058_RS00695	0.23	-1.2
12,058	+		HMPREF1058_RS00695	0.23	+1.4
12,058	+		HMPREF1058_RS00695	0.23	-0.5
12,071	-		HMPREF1058_RS00695	0.24	+1.1
12,087	-		HMPREF1058_RS00695	0.26	-0.1
12,087	-		HMPREF1058_RS00695	0.26	+0.2
12,115	+		HMPREF1058_RS00695	0.28	+0.9
12,116	-		HMPREF1058_RS00695	0.28	+0.5
12,157	+		HMPREF1058_RS00695	0.31	-0.1
12,158	-		HMPREF1058_RS00695	0.31	-0.0
12,180	+		HMPREF1058_RS00695	0.32	+0.3
12,181	-		HMPREF1058_RS00695	0.32	+1.1
12,238	+		HMPREF1058_RS00695	0.36	+0.5
12,238	+		HMPREF1058_RS00695	0.36	-0.4
12,260	+		HMPREF1058_RS00695	0.38	+1.0
12,261	-		HMPREF1058_RS00695	0.38	+1.1
12,265	+		HMPREF1058_RS00695	0.38	+0.3
12,267	+		HMPREF1058_RS00695	0.39	+0.9
12,294	+		HMPREF1058_RS00695	0.40	+1.2
12,383	-		HMPREF1058_RS00695	0.47	+0.1
12,392	-		HMPREF1058_RS00695	0.48	+1.0
12,457	-		HMPREF1058_RS00695	0.52	+0.5
12,461	-		HMPREF1058_RS00695	0.52	-0.1
12,476	+		HMPREF1058_RS00695	0.54	-0.2
12,487	+		HMPREF1058_RS00695	0.54	+0.2
12,500	-		HMPREF1058_RS00695	0.55	-0.6
12,529	+		HMPREF1058_RS00695	0.57	-0.3
12,726	-		HMPREF1058_RS00695	0.72	+0.0
12,727	+		HMPREF1058_RS00695	0.72	+0.9
12,728	-		HMPREF1058_RS00695	0.72	+0.5
12,728	-		HMPREF1058_RS00695	0.72	+0.3
12,797	-		HMPREF1058_RS00695	0.77	+1.6
12,800	-		HMPREF1058_RS00695	0.77	+0.7
12,805	+		HMPREF1058_RS00695	0.77	+0.4
12,805	+		HMPREF1058_RS00695	0.77	+0.4
12,806	-		HMPREF1058_RS00695	0.77	+0.8
12,905	-		HMPREF1058_RS00695	0.84	+0.3
12,910	+		HMPREF1058_RS00695	0.85	+2.0
12,946	+		HMPREF1058_RS00695	0.87	+1.3
12,957	+		HMPREF1058_RS00695	0.88	+2.0
12,958	-		HMPREF1058_RS00695	0.88	+1.2
13,014	-				-0.1
13,275	-				-1.3
13,500	-		HMPREF1058_RS00690	0.37	-1.4
13,582	+		HMPREF1058_RS00690	0.52	+1.1
13,611	+		HMPREF1058_RS00690	0.57	+0.1
13,612	-		HMPREF1058_RS00690	0.58	+0.9
13,612	-		HMPREF1058_RS00690	0.58	+0.3
13,671	+		HMPREF1058_RS00690	0.68	-0.5
13,809	-				+0.5
13,919	+				-1.5
13,920	-				+0.2
13,922	+				-0.4
13,923	-				-1.8
13,923	-				+0.7
13,961	-				+2.0
13,964	-				+0.6
14,079	+		HMPREF1058_RS00685	0.12	-0.2