Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00475 and HMPREF1058_RS00470 are separated by 4 nucleotides HMPREF1058_RS00470 and HMPREF1058_RS00465 are separated by 117 nucleotides HMPREF1058_RS00465 and HMPREF1058_RS00460 are separated by 59 nucleotides
HMPREF1058_RS00475: HMPREF1058_RS00475 - fumarylacetoacetate hydrolase family protein, at 67,223 to 67,840
_RS00475
HMPREF1058_RS00470: HMPREF1058_RS00470 - redox-sensing transcriptional repressor Rex, at 67,845 to 68,495
_RS00470
HMPREF1058_RS00465: HMPREF1058_RS00465 - translation initiation factor, at 68,613 to 68,951
_RS00465
HMPREF1058_RS00460: HMPREF1058_RS00460 - elongation factor Ts, at 69,011 to 70,000
_RS00460
Position (kb) 68
69 Strain fitness (log2 ratio) -1
0
1
2 at 67.655 kb on - strand, within HMPREF1058_RS00475 at 67.655 kb on - strand, within HMPREF1058_RS00475 at 67.844 kb on - strand at 67.872 kb on - strand at 67.989 kb on - strand, within HMPREF1058_RS00470 at 67.989 kb on - strand, within HMPREF1058_RS00470 at 67.996 kb on - strand, within HMPREF1058_RS00470 at 68.008 kb on - strand, within HMPREF1058_RS00470 at 68.013 kb on - strand, within HMPREF1058_RS00470 at 68.013 kb on - strand, within HMPREF1058_RS00470 at 68.016 kb on - strand, within HMPREF1058_RS00470 at 68.127 kb on - strand, within HMPREF1058_RS00470 at 68.314 kb on - strand, within HMPREF1058_RS00470 at 68.314 kb on - strand, within HMPREF1058_RS00470 at 68.314 kb on - strand, within HMPREF1058_RS00470 at 68.368 kb on - strand, within HMPREF1058_RS00470 at 68.484 kb on - strand at 68.484 kb on - strand at 68.484 kb on - strand at 68.488 kb on - strand at 68.510 kb on - strand at 68.652 kb on + strand, within HMPREF1058_RS00465 at 68.714 kb on + strand, within HMPREF1058_RS00465 at 68.863 kb on + strand, within HMPREF1058_RS00465 at 68.936 kb on + strand at 68.995 kb on - strand at 68.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 67,655 - HMPREF1058_RS00475 0.70 -1.0 67,655 - HMPREF1058_RS00475 0.70 +0.0 67,844 - -0.3 67,872 - -0.3 67,989 - HMPREF1058_RS00470 0.22 -0.8 67,989 - HMPREF1058_RS00470 0.22 -0.8 67,996 - HMPREF1058_RS00470 0.23 -1.7 68,008 - HMPREF1058_RS00470 0.25 -0.4 68,013 - HMPREF1058_RS00470 0.26 +0.4 68,013 - HMPREF1058_RS00470 0.26 +0.4 68,016 - HMPREF1058_RS00470 0.26 -0.6 68,127 - HMPREF1058_RS00470 0.43 -0.1 68,314 - HMPREF1058_RS00470 0.72 -0.4 68,314 - HMPREF1058_RS00470 0.72 -0.5 68,314 - HMPREF1058_RS00470 0.72 +0.7 68,368 - HMPREF1058_RS00470 0.80 +0.7 68,484 - -0.3 68,484 - -0.1 68,484 - +0.4 68,488 - -1.2 68,510 - -1.0 68,652 + HMPREF1058_RS00465 0.12 +0.2 68,714 + HMPREF1058_RS00465 0.30 +2.0 68,863 + HMPREF1058_RS00465 0.74 +0.6 68,936 + -0.2 68,995 - +1.1 68,995 - +0.5
Or see this region's nucleotide sequence