Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00440 and HMPREF1058_RS00435 overlap by 11 nucleotides HMPREF1058_RS00435 and HMPREF1058_RS00430 are separated by 360 nucleotides HMPREF1058_RS00430 and HMPREF1058_RS00425 are separated by 162 nucleotides
HMPREF1058_RS00440: HMPREF1058_RS00440 - hypothetical protein, at 72,259 to 72,504
_RS00440
HMPREF1058_RS00435: HMPREF1058_RS00435 - zeta toxin family protein, at 72,494 to 73,069
_RS00435
HMPREF1058_RS00430: HMPREF1058_RS00430 - DUF4488 domain-containing protein, at 73,430 to 73,924
_RS00430
HMPREF1058_RS00425: HMPREF1058_RS00425 - asparagine--tRNA ligase, at 74,087 to 75,490
_RS00425
Position (kb) 73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.536 kb on - strand at 72.637 kb on - strand, within HMPREF1058_RS00435 at 72.696 kb on - strand, within HMPREF1058_RS00435 at 72.773 kb on - strand, within HMPREF1058_RS00435 at 72.785 kb on - strand, within HMPREF1058_RS00435 at 72.823 kb on - strand, within HMPREF1058_RS00435 at 72.823 kb on - strand, within HMPREF1058_RS00435 at 72.921 kb on - strand, within HMPREF1058_RS00435 at 73.050 kb on - strand at 73.053 kb on - strand at 73.143 kb on + strand at 73.199 kb on + strand at 73.218 kb on - strand at 73.221 kb on + strand at 73.240 kb on + strand at 73.241 kb on - strand at 73.278 kb on - strand at 73.280 kb on + strand at 73.285 kb on - strand at 73.315 kb on + strand at 73.315 kb on + strand at 73.316 kb on - strand at 73.321 kb on + strand at 73.336 kb on + strand at 73.337 kb on - strand at 73.346 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.349 kb on - strand at 73.349 kb on - strand at 73.349 kb on - strand at 73.353 kb on - strand at 73.400 kb on + strand at 73.411 kb on + strand at 73.411 kb on + strand at 73.431 kb on + strand at 73.431 kb on + strand at 73.488 kb on + strand, within HMPREF1058_RS00430 at 73.489 kb on - strand, within HMPREF1058_RS00430 at 73.636 kb on + strand, within HMPREF1058_RS00430 at 73.681 kb on + strand, within HMPREF1058_RS00430 at 73.682 kb on - strand, within HMPREF1058_RS00430 at 73.712 kb on - strand, within HMPREF1058_RS00430 at 73.712 kb on - strand, within HMPREF1058_RS00430 at 73.793 kb on + strand, within HMPREF1058_RS00430 at 73.798 kb on - strand, within HMPREF1058_RS00430 at 73.892 kb on + strand at 73.930 kb on + strand at 73.931 kb on - strand at 73.933 kb on - strand at 73.933 kb on - strand at 73.934 kb on + strand at 73.935 kb on - strand at 73.935 kb on - strand at 73.938 kb on + strand at 73.939 kb on - strand at 73.939 kb on - strand at 74.052 kb on + strand at 74.052 kb on + strand at 74.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 72,536 - -0.9 72,637 - HMPREF1058_RS00435 0.25 -0.3 72,696 - HMPREF1058_RS00435 0.35 -0.4 72,773 - HMPREF1058_RS00435 0.48 -0.7 72,785 - HMPREF1058_RS00435 0.51 -2.3 72,823 - HMPREF1058_RS00435 0.57 -0.7 72,823 - HMPREF1058_RS00435 0.57 -0.8 72,921 - HMPREF1058_RS00435 0.74 -0.2 73,050 - -0.4 73,053 - +0.2 73,143 + +0.4 73,199 + +1.1 73,218 - +0.4 73,221 + -0.5 73,240 + +0.0 73,241 - +0.6 73,278 - +0.4 73,280 + +0.1 73,285 - +0.6 73,315 + -0.5 73,315 + +1.2 73,316 - +1.2 73,321 + +0.8 73,336 + -1.0 73,337 - +1.7 73,346 + +0.7 73,348 + +0.0 73,348 + +0.8 73,348 + +2.0 73,348 + -1.0 73,348 + +0.7 73,349 - -0.0 73,349 - +0.7 73,349 - +1.3 73,353 - +0.4 73,400 + -0.5 73,411 + +0.5 73,411 + +0.0 73,431 + -1.6 73,431 + +0.8 73,488 + HMPREF1058_RS00430 0.12 +0.4 73,489 - HMPREF1058_RS00430 0.12 +1.2 73,636 + HMPREF1058_RS00430 0.42 +0.5 73,681 + HMPREF1058_RS00430 0.51 -0.0 73,682 - HMPREF1058_RS00430 0.51 -0.6 73,712 - HMPREF1058_RS00430 0.57 +1.2 73,712 - HMPREF1058_RS00430 0.57 +0.2 73,793 + HMPREF1058_RS00430 0.73 -0.3 73,798 - HMPREF1058_RS00430 0.74 +1.2 73,892 + +0.5 73,930 + +0.4 73,931 - +0.8 73,933 - -0.2 73,933 - -1.8 73,934 + +0.1 73,935 - +0.3 73,935 - -0.2 73,938 + +0.4 73,939 - +0.7 73,939 - +0.1 74,052 + +1.6 74,052 + -0.3 74,073 - +0.1
Or see this region's nucleotide sequence