Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00250 and HMPREF1058_RS00245 are separated by 35 nucleotides HMPREF1058_RS00245 and HMPREF1058_RS00240 are separated by 100 nucleotides HMPREF1058_RS00240 and HMPREF1058_RS00235 are separated by 68 nucleotides
HMPREF1058_RS00250: HMPREF1058_RS00250 - transposase, at 22,546 to 23,550
_RS00250
HMPREF1058_RS00245: HMPREF1058_RS00245 - DUF5110 domain-containing protein, at 23,586 to 23,849
_RS00245
HMPREF1058_RS00240: HMPREF1058_RS00240 - tRNA-Leu, at 23,950 to 24,031
_RS00240
HMPREF1058_RS00235: HMPREF1058_RS00235 - S41 family peptidase, at 24,100 to 25,128
_RS00235
Position (kb) 23
24 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 23.637 kb on + strand, within HMPREF1058_RS00245 at 23.658 kb on + strand, within HMPREF1058_RS00245 at 23.660 kb on + strand, within HMPREF1058_RS00245 at 23.661 kb on - strand, within HMPREF1058_RS00245 at 23.661 kb on - strand, within HMPREF1058_RS00245 at 23.679 kb on + strand, within HMPREF1058_RS00245 at 23.680 kb on - strand, within HMPREF1058_RS00245 at 23.817 kb on + strand, within HMPREF1058_RS00245 at 23.874 kb on - strand at 23.937 kb on - strand at 24.081 kb on - strand at 24.118 kb on + strand at 24.147 kb on + strand at 24.151 kb on + strand at 24.151 kb on + strand at 24.152 kb on - strand at 24.152 kb on - strand at 24.236 kb on + strand, within HMPREF1058_RS00235 at 24.237 kb on - strand, within HMPREF1058_RS00235 at 24.237 kb on - strand, within HMPREF1058_RS00235 at 24.339 kb on + strand, within HMPREF1058_RS00235 at 24.344 kb on - strand, within HMPREF1058_RS00235 at 24.428 kb on - strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.507 kb on + strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.508 kb on - strand, within HMPREF1058_RS00235 at 24.582 kb on + strand, within HMPREF1058_RS00235 at 24.616 kb on - strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.684 kb on + strand, within HMPREF1058_RS00235 at 24.686 kb on + strand, within HMPREF1058_RS00235 at 24.691 kb on + strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.692 kb on - strand, within HMPREF1058_RS00235 at 24.706 kb on + strand, within HMPREF1058_RS00235 at 24.737 kb on + strand, within HMPREF1058_RS00235 at 24.749 kb on - strand, within HMPREF1058_RS00235 at 24.753 kb on - strand, within HMPREF1058_RS00235 at 24.753 kb on - strand, within HMPREF1058_RS00235 at 24.842 kb on - strand, within HMPREF1058_RS00235
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 23,637 + HMPREF1058_RS00245 0.19 -0.3 23,658 + HMPREF1058_RS00245 0.27 +0.6 23,660 + HMPREF1058_RS00245 0.28 +0.8 23,661 - HMPREF1058_RS00245 0.28 +0.7 23,661 - HMPREF1058_RS00245 0.28 -0.0 23,679 + HMPREF1058_RS00245 0.35 +1.3 23,680 - HMPREF1058_RS00245 0.36 +0.0 23,817 + HMPREF1058_RS00245 0.88 +1.4 23,874 - -0.2 23,937 - +5.0 24,081 - +3.0 24,118 + -1.2 24,147 + +1.4 24,151 + +1.2 24,151 + -0.4 24,152 - -0.5 24,152 - -1.4 24,236 + HMPREF1058_RS00235 0.13 -0.0 24,237 - HMPREF1058_RS00235 0.13 -0.6 24,237 - HMPREF1058_RS00235 0.13 -0.0 24,339 + HMPREF1058_RS00235 0.23 +1.4 24,344 - HMPREF1058_RS00235 0.24 +0.8 24,428 - HMPREF1058_RS00235 0.32 -0.6 24,507 + HMPREF1058_RS00235 0.40 -0.5 24,507 + HMPREF1058_RS00235 0.40 +0.3 24,507 + HMPREF1058_RS00235 0.40 +0.3 24,507 + HMPREF1058_RS00235 0.40 +1.1 24,508 - HMPREF1058_RS00235 0.40 -0.5 24,508 - HMPREF1058_RS00235 0.40 -0.1 24,508 - HMPREF1058_RS00235 0.40 -0.3 24,582 + HMPREF1058_RS00235 0.47 -0.5 24,616 - HMPREF1058_RS00235 0.50 +0.4 24,684 + HMPREF1058_RS00235 0.57 -0.1 24,684 + HMPREF1058_RS00235 0.57 -0.0 24,684 + HMPREF1058_RS00235 0.57 +0.5 24,686 + HMPREF1058_RS00235 0.57 -1.1 24,691 + HMPREF1058_RS00235 0.57 -0.4 24,692 - HMPREF1058_RS00235 0.58 -0.2 24,692 - HMPREF1058_RS00235 0.58 -0.4 24,692 - HMPREF1058_RS00235 0.58 -1.2 24,706 + HMPREF1058_RS00235 0.59 -0.8 24,737 + HMPREF1058_RS00235 0.62 -0.6 24,749 - HMPREF1058_RS00235 0.63 +1.8 24,753 - HMPREF1058_RS00235 0.63 +0.3 24,753 - HMPREF1058_RS00235 0.63 +0.5 24,842 - HMPREF1058_RS00235 0.72 -0.2
Or see this region's nucleotide sequence