Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04615

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
1,003,082	+		HSERO_RS04610	0.11	-0.3
1,003,101	+		HSERO_RS04610	0.13	+0.1
1,003,107	+		HSERO_RS04610	0.14	+0.1
1,003,115	-		HSERO_RS04610	0.14	+1.0
1,003,145	-		HSERO_RS04610	0.17	+0.1
1,003,174	+		HSERO_RS04610	0.20	+0.4
1,003,174	+		HSERO_RS04610	0.20	-0.0
1,003,176	-		HSERO_RS04610	0.20	-0.0
1,003,179	+		HSERO_RS04610	0.20	-0.9
1,003,179	+		HSERO_RS04610	0.20	-0.3
1,003,187	-				+1.0
1,003,190	-				+0.9
1,003,200	-		HSERO_RS04610	0.22	-1.2
1,003,235	+		HSERO_RS04610	0.25	-1.9
1,003,271	+		HSERO_RS04610	0.28	-0.5
1,003,271	+		HSERO_RS04610	0.28	-0.2
1,003,271	+		HSERO_RS04610	0.28	+0.8
1,003,271	+		HSERO_RS04610	0.28	-0.2
1,003,271	+		HSERO_RS04610	0.28	-1.3
1,003,277	+		HSERO_RS04610	0.29	-1.0
1,003,277	+		HSERO_RS04610	0.29	-1.3
1,003,277	+		HSERO_RS04610	0.29	-0.2
1,003,279	-		HSERO_RS04610	0.29	-0.3
1,003,279	-		HSERO_RS04610	0.29	-0.6
1,003,279	-		HSERO_RS04610	0.29	+0.6
1,003,279	-		HSERO_RS04610	0.29	-1.1
1,003,279	-		HSERO_RS04610	0.29	-0.8
1,003,285	-		HSERO_RS04610	0.29	-0.4
1,003,303	+				+0.2
1,003,304	+		HSERO_RS04610	0.31	-1.0
1,003,329	+		HSERO_RS04610	0.33	+0.2
1,003,329	+		HSERO_RS04610	0.33	+2.0
1,003,329	+		HSERO_RS04610	0.33	-1.1
1,003,329	+		HSERO_RS04610	0.33	+0.4
1,003,329	+		HSERO_RS04610	0.33	-0.4
1,003,330	+		HSERO_RS04610	0.34	-0.4
1,003,337	-		HSERO_RS04610	0.34	+0.0
1,003,337	-		HSERO_RS04610	0.34	-0.0
1,003,337	-		HSERO_RS04610	0.34	-1.1
1,003,337	-		HSERO_RS04610	0.34	-0.0
1,003,337	-		HSERO_RS04610	0.34	+1.6
1,003,337	-		HSERO_RS04610	0.34	-1.6
1,003,337	-		HSERO_RS04610	0.34	+0.1
1,003,356	-		HSERO_RS04610	0.36	-1.5
1,003,370	-		HSERO_RS04610	0.37	-0.0
1,003,375	+		HSERO_RS04610	0.38	+0.8
1,003,407	-		HSERO_RS04610	0.40	-0.1
1,003,409	+				+0.7
1,003,412	-		HSERO_RS04610	0.41	+0.1
1,003,417	-		HSERO_RS04610	0.41	+0.0
1,003,439	+		HSERO_RS04610	0.43	-1.6
1,003,439	+		HSERO_RS04610	0.43	+0.5
1,003,443	-		HSERO_RS04610	0.44	-0.1
1,003,443	-		HSERO_RS04610	0.44	-0.7
1,003,443	-		HSERO_RS04610	0.44	-1.4
1,003,444	+		HSERO_RS04610	0.44	+0.2
1,003,447	-		HSERO_RS04610	0.44	-0.5
1,003,447	-		HSERO_RS04610	0.44	+0.6
1,003,447	-				+1.2
1,003,456	+		HSERO_RS04610	0.45	+1.3
1,003,482	-		HSERO_RS04610	0.47	+0.2
1,003,498	-		HSERO_RS04610	0.49	-0.0
1,003,498	-		HSERO_RS04610	0.49	+0.1
1,003,503	-		HSERO_RS04610	0.49	+2.4
1,003,503	-		HSERO_RS04610	0.49	+0.1
1,003,527	+		HSERO_RS04610	0.51	+0.0
1,003,549	+		HSERO_RS04610	0.53	-2.9
1,003,557	-		HSERO_RS04610	0.54	-0.3
1,003,559	+		HSERO_RS04610	0.54	-1.2
1,003,559	+		HSERO_RS04610	0.54	+0.6
1,003,565	-				+2.2
1,003,567	-		HSERO_RS04610	0.55	-1.6
1,003,567	-		HSERO_RS04610	0.55	-0.1
1,003,594	+		HSERO_RS04610	0.57	-0.4
1,003,608	+		HSERO_RS04610	0.58	+0.3
1,003,608	+		HSERO_RS04610	0.58	-0.5
1,003,608	+		HSERO_RS04610	0.58	+0.8
1,003,616	-		HSERO_RS04610	0.59	+0.4
1,003,616	-		HSERO_RS04610	0.59	+0.2
1,003,616	-		HSERO_RS04610	0.59	+0.5
1,003,616	-		HSERO_RS04610	0.59	+0.3
1,003,628	-		HSERO_RS04610	0.60	-0.5
1,003,671	-		HSERO_RS04610	0.64	-0.9
1,003,703	-		HSERO_RS04610	0.67	+0.2
1,003,712	+		HSERO_RS04610	0.68	+0.4
1,003,720	-		HSERO_RS04610	0.68	-0.7
1,003,721	+				+1.7
1,003,729	-		HSERO_RS04610	0.69	+0.6
1,003,729	-		HSERO_RS04610	0.69	-0.7
1,003,799	+		HSERO_RS04610	0.76	+3.2
1,003,893	+		HSERO_RS04610	0.84	+0.5
1,003,911	+		HSERO_RS04610	0.86	-0.9
1,003,911	+		HSERO_RS04610	0.86	+1.6
1,003,911	+		HSERO_RS04610	0.86	-0.9
1,003,911	+		HSERO_RS04610	0.86	+1.1
1,003,911	+		HSERO_RS04610	0.86	+0.1
1,003,958	-		HSERO_RS04610	0.90	-0.7
1,003,959	-		HSERO_RS04610	0.90	+0.6
1,003,966	+				+0.1
1,003,966	+				-0.8
1,003,966	+				+1.2
1,003,976	-				-0.5
1,003,979	-				+0.4
1,004,009	-				+0.8
1,004,044	+				-0.7
1,004,054	+				-0.3
1,004,054	+				-1.3
1,004,054	+				+0.3
1,004,054	+				+0.2
1,004,058	+				+1.9
1,004,062	-				+1.7
1,004,062	-				+2.0
1,004,069	+				+0.3
1,004,072	-				-0.7
1,004,072	-				-1.5
1,004,072	-				-2.1
1,004,116	-				+0.1
1,004,131	-				+0.2
1,004,156	-		HSERO_RS04615	0.14	-0.4
1,004,181	+		HSERO_RS04615	0.17	+0.7
1,004,196	+		HSERO_RS04615	0.20	-0.5
1,004,196	+		HSERO_RS04615	0.20	+0.2
1,004,199	-		HSERO_RS04615	0.20	-0.5
1,004,204	-		HSERO_RS04615	0.21	+0.4
1,004,227	+		HSERO_RS04615	0.25	-0.7
1,004,240	+		HSERO_RS04615	0.27	+0.9
1,004,267	-		HSERO_RS04615	0.31	-0.5
1,004,292	+		HSERO_RS04615	0.35	-0.1
1,004,292	+		HSERO_RS04615	0.35	+0.0
1,004,300	-		HSERO_RS04615	0.36	-0.4
1,004,300	-		HSERO_RS04615	0.36	-0.8
1,004,300	-		HSERO_RS04615	0.36	-0.3
1,004,300	-		HSERO_RS04615	0.36	-1.0
1,004,300	-		HSERO_RS04615	0.36	+0.3
1,004,347	+		HSERO_RS04615	0.43	+0.4
1,004,350	+		HSERO_RS04615	0.44	-0.0
1,004,358	-		HSERO_RS04615	0.45	+0.3
1,004,385	+		HSERO_RS04615	0.49	-0.1
1,004,385	+		HSERO_RS04615	0.49	+0.1
1,004,385	+		HSERO_RS04615	0.49	-0.0
1,004,401	+		HSERO_RS04615	0.51	-0.2
1,004,409	+		HSERO_RS04615	0.53	-0.6
1,004,409	+		HSERO_RS04615	0.53	-0.0
1,004,409	+		HSERO_RS04615	0.53	-0.1
1,004,409	+		HSERO_RS04615	0.53	-0.7
1,004,409	+		HSERO_RS04615	0.53	+2.0
1,004,409	+		HSERO_RS04615	0.53	+0.2
1,004,409	+		HSERO_RS04615	0.53	+0.1
1,004,409	+		HSERO_RS04615	0.53	-1.0
1,004,409	+		HSERO_RS04615	0.53	-0.0
1,004,409	+		HSERO_RS04615	0.53	+0.0
1,004,417	-		HSERO_RS04615	0.54	+0.9
1,004,417	-		HSERO_RS04615	0.54	+0.3
1,004,426	+		HSERO_RS04615	0.55	+0.8
1,004,431	+		HSERO_RS04615	0.56	-1.2
1,004,439	-		HSERO_RS04615	0.57	-0.4
1,004,441	+		HSERO_RS04615	0.58	-0.2
1,004,441	+		HSERO_RS04615	0.58	-1.6
1,004,444	-		HSERO_RS04615	0.58	+0.4
1,004,451	+		HSERO_RS04615	0.59	-1.6
1,004,451	+		HSERO_RS04615	0.59	-0.0
1,004,451	+		HSERO_RS04615	0.59	+0.0
1,004,451	+		HSERO_RS04615	0.59	+0.2
1,004,475	-		HSERO_RS04615	0.63	-0.0
1,004,491	+		HSERO_RS04615	0.65	-1.8
1,004,493	+		HSERO_RS04615	0.66	+0.8
1,004,493	+		HSERO_RS04615	0.66	+0.4
1,004,497	+		HSERO_RS04615	0.66	-0.6
1,004,497	+		HSERO_RS04615	0.66	-0.7
1,004,501	-		HSERO_RS04615	0.67	-1.6
1,004,503	+		HSERO_RS04615	0.67	-0.4
1,004,505	-		HSERO_RS04615	0.67	+0.1
1,004,505	-				+0.7
1,004,517	+		HSERO_RS04615	0.69	-0.0
1,004,518	-		HSERO_RS04615	0.69	-0.3
1,004,518	-		HSERO_RS04615	0.69	+0.1
1,004,520	-		HSERO_RS04615	0.70	-0.9
1,004,520	-		HSERO_RS04615	0.70	+1.1
1,004,525	+		HSERO_RS04615	0.71	-0.2
1,004,525	+		HSERO_RS04615	0.71	-0.2
1,004,525	+		HSERO_RS04615	0.71	-0.0
1,004,543	+		HSERO_RS04615	0.73	+0.6
1,004,544	+		HSERO_RS04615	0.73	-0.4
1,004,544	-		HSERO_RS04615	0.73	+0.0
1,004,551	-		HSERO_RS04615	0.75	-1.0
1,004,551	-		HSERO_RS04615	0.75	+1.1
1,004,551	-		HSERO_RS04615	0.75	-0.3
1,004,551	-		HSERO_RS04615	0.75	-0.4
1,004,551	-		HSERO_RS04615	0.75	+1.4
1,004,597	-		HSERO_RS04615	0.82	+0.8
1,004,597	-		HSERO_RS04615	0.82	-0.3
1,004,617	+		HSERO_RS04615	0.85	-0.3
1,004,617	-		HSERO_RS04615	0.85	-0.9
1,004,619	+		HSERO_RS04615	0.85	-0.6
1,004,619	+		HSERO_RS04615	0.85	-1.0
1,004,619	+		HSERO_RS04615	0.85	-0.3
1,004,627	-		HSERO_RS04615	0.86	-0.7
1,004,627	-		HSERO_RS04615	0.86	-0.5
1,004,629	+		HSERO_RS04615	0.87	-0.8
1,004,629	+		HSERO_RS04615	0.87	-0.3
1,004,629	+		HSERO_RS04615	0.87	-0.3
1,004,630	-		HSERO_RS04615	0.87	+0.3
1,004,637	-		HSERO_RS04615	0.88	-0.5
1,004,650	-		HSERO_RS04615	0.90	-0.1
1,004,660	+				+0.3
1,004,686	+				+0.3
1,004,691	+				-0.2
1,004,691	+				-1.0
1,004,691	+				-0.3
1,004,700	+				-0.1
1,004,700	+				+1.3
1,004,700	+				+0.5
1,004,700	+				-0.0
1,004,706	-				-0.8
1,004,706	-				+1.0
1,004,708	-				+1.6
1,004,708	-				-0.1
1,004,708	-				-0.3
1,004,708	-				+0.2
1,004,713	+				-0.2
1,004,713	+				-1.1
1,004,743	+				-0.6
1,004,743	+				-0.1
1,004,743	+				-0.8
1,004,743	+				+0.4
1,004,743	+				-0.5
1,004,743	+				-0.2
1,004,743	+				-1.5
1,004,743	+				-0.2
1,004,751	-				+0.2
1,004,751	-				-0.3
1,004,751	-				-0.5
1,004,751	-				+1.8
1,004,751	-				+0.8
1,004,751	-				+0.0
1,004,751	-				+0.2
1,004,788	+				+0.1
1,004,796	-				-0.1
1,004,803	+				+0.0
1,004,811	-				-0.5
1,004,816	-				-0.2
1,004,816	-				+0.4
1,004,829	+				+1.1
1,004,829	+				+0.2
1,004,829	+				+0.4
1,004,829	+				-0.4
1,004,834	+				+0.1
1,004,834	+				+0.0
1,004,834	+				+0.0
1,004,834	+				+1.0
1,004,837	-				-0.4
1,004,837	-				-0.3
1,004,837	-				+0.2
1,004,837	-				-0.4
1,004,842	-				+0.4
1,004,842	-				+0.5
1,004,842	-				-0.9
1,004,842	-				-0.0
1,004,842	-				+2.4
1,004,842	-				-1.6
1,004,842	-				+0.8
1,004,842	-				-0.1
1,004,867	-				-0.9
1,004,867	-				+0.2
1,004,867	-				+0.1
1,004,872	-				+1.6
1,004,895	+				+1.0
1,004,905	+				-0.9
1,004,905	+				-0.2
1,004,912	+				-1.2
1,004,916	+				-0.8
1,004,922	+				+0.3
1,004,922	+				-0.1
1,004,922	+				-0.5
1,004,922	+				-0.1
1,004,930	-				-1.3
1,004,993	-				-0.7
1,004,995	+				+0.1
1,004,995	+				+0.5
1,004,995	+				-0.6
1,005,002	+				-2.2
1,005,003	-				-0.3
1,005,034	+				+0.2
1,005,037	-				-0.8
1,005,059	-				+0.7
1,005,128	+				+0.9
1,005,128	+				-0.3
1,005,128	+				-0.7
1,005,136	-				+0.0
1,005,136	-				+0.4
1,005,136	-				-0.1
1,005,140	+				-0.1
1,005,224	-				+0.2
1,005,232	+				-0.7
1,005,241	-				+0.5
1,005,251	-				-0.5
1,005,286	+				+0.0
1,005,294	-				+0.2
1,005,348	+				+0.5
1,005,348	+				-0.3
1,005,356	-				+1.6
1,005,356	-				-0.2
1,005,359	+				-0.2
1,005,388	-				-0.6
1,005,397	+				-0.2
1,005,439	+				+1.1
1,005,540	+		HSERO_RS04620	0.15	-0.1
1,005,558	-		HSERO_RS04620	0.17	-0.1
1,005,596	+		HSERO_RS04620	0.21	+0.8
1,005,604	-		HSERO_RS04620	0.21	-0.4
1,005,622	+		HSERO_RS04620	0.23	+0.2
1,005,674	+		HSERO_RS04620	0.28	+3.2
1,005,715	+		HSERO_RS04620	0.32	+0.2