Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
HSERO_RS04375: HSERO_RS04375 - hypothetical protein, at 969,545 to 970,003
_RS04375
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 968.554 kb on + strand at 968.577 kb on + strand at 968.579 kb on + strand at 968.585 kb on - strand at 968.646 kb on + strand at 968.671 kb on + strand at 968.671 kb on + strand at 968.679 kb on - strand at 968.679 kb on - strand at 968.684 kb on - strand at 968.723 kb on + strand at 968.729 kb on + strand at 968.737 kb on - strand at 968.771 kb on + strand at 968.814 kb on + strand at 968.815 kb on + strand at 968.872 kb on + strand at 968.880 kb on - strand at 968.880 kb on - strand at 968.880 kb on - strand at 968.880 kb on - strand at 968.880 kb on - strand at 968.906 kb on + strand at 968.916 kb on + strand at 968.921 kb on + strand at 968.921 kb on + strand at 968.924 kb on - strand at 968.924 kb on - strand at 968.924 kb on - strand at 968.929 kb on - strand at 968.936 kb on + strand at 968.983 kb on + strand at 969.012 kb on + strand at 969.013 kb on + strand at 969.021 kb on - strand at 969.043 kb on - strand at 969.048 kb on + strand at 969.048 kb on + strand at 969.049 kb on - strand at 969.054 kb on - strand at 969.121 kb on + strand at 969.206 kb on + strand at 969.240 kb on + strand at 969.273 kb on - strand at 969.295 kb on + strand at 969.295 kb on + strand at 969.353 kb on + strand at 969.361 kb on - strand at 969.361 kb on - strand at 969.366 kb on + strand at 969.366 kb on + strand at 969.428 kb on + strand at 969.465 kb on + strand at 969.465 kb on + strand at 969.465 kb on + strand at 969.465 kb on + strand at 969.465 kb on + strand at 969.473 kb on - strand at 969.473 kb on - strand at 969.473 kb on - strand at 969.473 kb on - strand at 969.473 kb on - strand at 969.512 kb on - strand at 969.517 kb on - strand at 969.561 kb on + strand at 969.561 kb on + strand at 969.561 kb on + strand at 969.567 kb on + strand at 969.569 kb on - strand at 969.572 kb on + strand at 969.572 kb on + strand at 969.580 kb on - strand at 969.580 kb on - strand at 969.582 kb on + strand at 969.590 kb on - strand at 969.590 kb on - strand at 969.611 kb on - strand, within HSERO_RS04375 at 969.673 kb on + strand, within HSERO_RS04375 at 969.678 kb on + strand, within HSERO_RS04375 at 969.696 kb on - strand, within HSERO_RS04375 at 969.709 kb on + strand, within HSERO_RS04375 at 969.709 kb on + strand, within HSERO_RS04375 at 969.731 kb on + strand, within HSERO_RS04375 at 969.751 kb on + strand, within HSERO_RS04375 at 969.751 kb on + strand, within HSERO_RS04375 at 969.759 kb on - strand, within HSERO_RS04375 at 969.763 kb on + strand, within HSERO_RS04375 at 969.779 kb on - strand, within HSERO_RS04375 at 969.813 kb on + strand, within HSERO_RS04375 at 969.821 kb on - strand, within HSERO_RS04375 at 969.831 kb on - strand, within HSERO_RS04375 at 969.841 kb on + strand, within HSERO_RS04375 at 969.841 kb on + strand, within HSERO_RS04375 at 969.841 kb on + strand, within HSERO_RS04375 at 969.849 kb on - strand at 969.849 kb on - strand, within HSERO_RS04375 at 969.849 kb on - strand, within HSERO_RS04375 at 969.859 kb on - strand, within HSERO_RS04375 at 969.900 kb on + strand, within HSERO_RS04375 at 969.906 kb on + strand, within HSERO_RS04375 at 969.906 kb on + strand, within HSERO_RS04375 at 969.913 kb on - strand, within HSERO_RS04375 at 969.943 kb on + strand, within HSERO_RS04375 at 969.951 kb on + strand, within HSERO_RS04375 at 969.951 kb on - strand, within HSERO_RS04375 at 969.959 kb on - strand at 969.960 kb on + strand at 969.971 kb on + strand at 969.971 kb on + strand at 969.971 kb on + strand at 969.971 kb on + strand at 969.971 kb on + strand at 969.979 kb on - strand at 970.043 kb on - strand at 970.057 kb on - strand at 970.069 kb on - strand at 970.080 kb on - strand at 970.080 kb on - strand at 970.083 kb on + strand at 970.083 kb on + strand at 970.083 kb on + strand at 970.088 kb on + strand at 970.088 kb on + strand at 970.088 kb on + strand at 970.088 kb on + strand at 970.088 kb on + strand at 970.088 kb on - strand at 970.091 kb on - strand at 970.091 kb on - strand at 970.095 kb on - strand at 970.096 kb on - strand at 970.170 kb on + strand at 970.170 kb on + strand at 970.170 kb on + strand at 970.175 kb on + strand at 970.175 kb on + strand at 970.212 kb on + strand at 970.220 kb on - strand at 970.230 kb on - strand at 970.230 kb on - strand at 970.230 kb on - strand at 970.271 kb on + strand at 970.279 kb on + strand at 970.279 kb on + strand at 970.279 kb on + strand at 970.279 kb on + strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.287 kb on - strand at 970.300 kb on + strand at 970.303 kb on - strand at 970.306 kb on - strand at 970.308 kb on - strand at 970.323 kb on + strand at 970.337 kb on + strand at 970.345 kb on - strand at 970.368 kb on + strand at 970.368 kb on + strand at 970.369 kb on + strand at 970.376 kb on - strand at 970.376 kb on - strand at 970.376 kb on - strand at 970.376 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.377 kb on - strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.394 kb on + strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.402 kb on - strand at 970.429 kb on + strand at 970.470 kb on + strand at 970.475 kb on + strand at 970.483 kb on - strand at 970.506 kb on + strand at 970.550 kb on - strand at 970.590 kb on + strand at 970.597 kb on - strand at 970.613 kb on + strand at 970.676 kb on - strand at 970.699 kb on + strand at 970.770 kb on + strand at 970.803 kb on + strand at 970.851 kb on + strand at 970.851 kb on + strand at 970.856 kb on + strand at 970.856 kb on + strand at 970.859 kb on - strand at 970.864 kb on - strand at 970.864 kb on - strand at 970.880 kb on + strand at 970.897 kb on + strand at 970.903 kb on + strand at 970.987 kb on + strand at 970.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 968,554 + -0.2 968,577 + +0.1 968,579 + -0.4 968,585 - +1.4 968,646 + -1.0 968,671 + -2.1 968,671 + -0.4 968,679 - -0.2 968,679 - +0.0 968,684 - -0.2 968,723 + -1.5 968,729 + +0.2 968,737 - +0.1 968,771 + +1.2 968,814 + +1.4 968,815 + +0.4 968,872 + -0.1 968,880 - -0.1 968,880 - -0.5 968,880 - +0.6 968,880 - -0.3 968,880 - +0.1 968,906 + -0.0 968,916 + -3.6 968,921 + +0.9 968,921 + -0.4 968,924 - -1.9 968,924 - +0.5 968,924 - -0.2 968,929 - -1.7 968,936 + -0.3 968,983 + -0.4 969,012 + -1.6 969,013 + -0.7 969,021 - +0.0 969,043 - -0.0 969,048 + +1.1 969,048 + -1.5 969,049 - +0.4 969,054 - -0.3 969,121 + -0.6 969,206 + +0.6 969,240 + -0.5 969,273 - -0.2 969,295 + +0.0 969,295 + -0.2 969,353 + -0.7 969,361 - -0.3 969,361 - +4.6 969,366 + -1.5 969,366 + -0.3 969,428 + +0.4 969,465 + +1.0 969,465 + -0.2 969,465 + -0.2 969,465 + +0.6 969,465 + -2.2 969,473 - +0.9 969,473 - -0.5 969,473 - -0.1 969,473 - +3.9 969,473 - +1.2 969,512 - +0.3 969,517 - +1.4 969,561 + +0.6 969,561 + -0.3 969,561 + -0.3 969,567 + +0.2 969,569 - -0.5 969,572 + -1.1 969,572 + -0.9 969,580 - +0.7 969,580 - -1.0 969,582 + +0.0 969,590 - -1.0 969,590 - +0.2 969,611 - HSERO_RS04375 0.14 -2.3 969,673 + HSERO_RS04375 0.28 -0.8 969,678 + HSERO_RS04375 0.29 -0.5 969,696 - HSERO_RS04375 0.33 +0.4 969,709 + HSERO_RS04375 0.36 +0.2 969,709 + HSERO_RS04375 0.36 -0.1 969,731 + HSERO_RS04375 0.41 +0.1 969,751 + HSERO_RS04375 0.45 +0.2 969,751 + HSERO_RS04375 0.45 -0.5 969,759 - HSERO_RS04375 0.47 +0.1 969,763 + HSERO_RS04375 0.47 +1.3 969,779 - HSERO_RS04375 0.51 -0.9 969,813 + HSERO_RS04375 0.58 -0.7 969,821 - HSERO_RS04375 0.60 -0.7 969,831 - HSERO_RS04375 0.62 -0.4 969,841 + HSERO_RS04375 0.64 -0.3 969,841 + HSERO_RS04375 0.64 -0.8 969,841 + HSERO_RS04375 0.64 +0.3 969,849 - -1.2 969,849 - HSERO_RS04375 0.66 -0.8 969,849 - HSERO_RS04375 0.66 -1.0 969,859 - HSERO_RS04375 0.68 +0.1 969,900 + HSERO_RS04375 0.77 -0.3 969,906 + HSERO_RS04375 0.79 +0.5 969,906 + HSERO_RS04375 0.79 +0.6 969,913 - HSERO_RS04375 0.80 -0.4 969,943 + HSERO_RS04375 0.87 -1.7 969,951 + HSERO_RS04375 0.88 -0.6 969,951 - HSERO_RS04375 0.88 +0.4 969,959 - -0.4 969,960 + -0.8 969,971 + -0.3 969,971 + +0.1 969,971 + -0.9 969,971 + -0.6 969,971 + +0.2 969,979 - -0.3 970,043 - -1.4 970,057 - -0.6 970,069 - -0.2 970,080 - +0.5 970,080 - -0.7 970,083 + +1.1 970,083 + -0.3 970,083 + -0.5 970,088 + -0.1 970,088 + -0.5 970,088 + +0.4 970,088 + -0.5 970,088 + -0.6 970,088 - -0.2 970,091 - -3.1 970,091 - -1.8 970,095 - -0.3 970,096 - -0.5 970,170 + -0.3 970,170 + -0.1 970,170 + -1.9 970,175 + -0.5 970,175 + +0.0 970,212 + -0.8 970,220 - +0.1 970,230 - -0.9 970,230 - +0.6 970,230 - -0.2 970,271 + +0.3 970,279 + +0.1 970,279 + -0.5 970,279 + +0.4 970,279 + +0.0 970,287 - -0.4 970,287 - -0.4 970,287 - +0.1 970,287 - -0.7 970,287 - -0.3 970,287 - -0.7 970,287 - -0.0 970,300 + +0.2 970,303 - -0.1 970,306 - -1.4 970,308 - +1.2 970,323 + +0.3 970,337 + -0.7 970,345 - +0.7 970,368 + +0.4 970,368 + +3.4 970,369 + -0.3 970,376 - +0.2 970,376 - +0.2 970,376 - -0.5 970,376 - +0.4 970,377 - -1.5 970,377 - -0.2 970,377 - +0.0 970,377 - +0.7 970,377 - -0.4 970,377 - -0.7 970,377 - -0.4 970,377 - -0.2 970,394 + +0.5 970,394 + +0.3 970,394 + -0.8 970,394 + +1.6 970,394 + +0.1 970,394 + +1.1 970,394 + -0.5 970,394 + -0.3 970,402 - -0.8 970,402 - -0.6 970,402 - -1.5 970,402 - -0.2 970,402 - +0.1 970,402 - -0.0 970,402 - +0.4 970,402 - +0.1 970,402 - +0.6 970,429 + +0.1 970,470 + -1.6 970,475 + -0.4 970,483 - -0.4 970,506 + -0.7 970,550 - -0.6 970,590 + -0.7 970,597 - -1.7 970,613 + -0.4 970,676 - -0.3 970,699 + -0.0 970,770 + -1.9 970,803 + -0.2 970,851 + -1.0 970,851 + -0.6 970,856 + -0.2 970,856 + -0.1 970,859 - -0.0 970,864 - +0.3 970,864 - +0.1 970,880 + -0.4 970,897 + -2.0 970,903 + +0.4 970,987 + +1.1 970,994 - +0.3
Or see this region's nucleotide sequence