Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02520 and HSERO_RS02525 are separated by 14 nucleotides HSERO_RS02525 and HSERO_RS02530 are separated by 189 nucleotides HSERO_RS02530 and HSERO_RS02535 are separated by 249 nucleotides
HSERO_RS02520: HSERO_RS02520 - transcriptional regulator, at 554,479 to 555,774
_RS02520
HSERO_RS02525: HSERO_RS02525 - glutamine amidotransferase, at 555,789 to 556,505
_RS02525
HSERO_RS02530: HSERO_RS02530 - LysR family transcriptional regulator, at 556,695 to 557,579
_RS02530
HSERO_RS02535: HSERO_RS02535 - short-chain dehydrogenase, at 557,829 to 558,578
_RS02535
Position (kb) 556
557
558 Strain fitness (log2 ratio) -1
0
1
2 at 555.720 kb on - strand at 555.792 kb on + strand at 555.795 kb on - strand at 555.829 kb on - strand at 555.858 kb on + strand at 555.947 kb on + strand, within HSERO_RS02525 at 555.947 kb on + strand, within HSERO_RS02525 at 556.163 kb on + strand, within HSERO_RS02525 at 556.163 kb on + strand, within HSERO_RS02525 at 556.171 kb on - strand at 556.171 kb on - strand, within HSERO_RS02525 at 556.171 kb on - strand, within HSERO_RS02525 at 556.421 kb on + strand, within HSERO_RS02525 at 556.642 kb on - strand at 556.668 kb on + strand at 556.668 kb on + strand at 556.669 kb on - strand at 556.675 kb on - strand at 556.698 kb on + strand at 556.701 kb on - strand at 556.701 kb on - strand at 556.783 kb on + strand at 556.783 kb on + strand at 556.788 kb on + strand, within HSERO_RS02530 at 556.801 kb on - strand, within HSERO_RS02530 at 556.873 kb on + strand, within HSERO_RS02530 at 556.875 kb on + strand, within HSERO_RS02530 at 556.893 kb on + strand, within HSERO_RS02530 at 557.137 kb on - strand, within HSERO_RS02530 at 557.172 kb on - strand, within HSERO_RS02530 at 557.380 kb on + strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.388 kb on - strand, within HSERO_RS02530 at 557.393 kb on - strand, within HSERO_RS02530 at 557.525 kb on - strand at 557.562 kb on + strand at 557.793 kb on - strand at 558.051 kb on + strand, within HSERO_RS02535 at 558.216 kb on + strand, within HSERO_RS02535 at 558.226 kb on + strand, within HSERO_RS02535 at 558.444 kb on + strand, within HSERO_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 555,720 - +0.7 555,792 + -0.2 555,795 - +1.9 555,829 - +0.9 555,858 + -0.5 555,947 + HSERO_RS02525 0.22 +0.0 555,947 + HSERO_RS02525 0.22 +0.4 556,163 + HSERO_RS02525 0.52 +0.9 556,163 + HSERO_RS02525 0.52 +0.8 556,171 - +0.6 556,171 - HSERO_RS02525 0.53 +0.5 556,171 - HSERO_RS02525 0.53 -0.2 556,421 + HSERO_RS02525 0.88 -0.7 556,642 - -0.5 556,668 + -0.5 556,668 + -0.5 556,669 - -0.3 556,675 - +0.7 556,698 + +1.1 556,701 - +2.1 556,701 - -0.1 556,783 + +0.4 556,783 + +1.2 556,788 + HSERO_RS02530 0.11 -0.8 556,801 - HSERO_RS02530 0.12 -1.3 556,873 + HSERO_RS02530 0.20 -0.1 556,875 + HSERO_RS02530 0.20 -0.1 556,893 + HSERO_RS02530 0.22 -1.0 557,137 - HSERO_RS02530 0.50 -0.3 557,172 - HSERO_RS02530 0.54 +0.2 557,380 + HSERO_RS02530 0.77 -0.3 557,388 - HSERO_RS02530 0.78 +0.4 557,388 - HSERO_RS02530 0.78 -0.6 557,393 - HSERO_RS02530 0.79 -0.5 557,525 - +0.4 557,562 + +0.4 557,793 - -0.4 558,051 + HSERO_RS02535 0.30 -0.4 558,216 + HSERO_RS02535 0.52 -0.2 558,226 + HSERO_RS02535 0.53 +0.7 558,444 + HSERO_RS02535 0.82 -0.3
Or see this region's nucleotide sequence