Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04125 and HSERO_RS04130 are separated by 115 nucleotides HSERO_RS04130 and HSERO_RS04135 are separated by 49 nucleotides
HSERO_RS04125: HSERO_RS04125 - LysR family transcriptional regulator, at 903,540 to 904,469
_RS04125
HSERO_RS04130: HSERO_RS04130 - proline/betaine transporter, at 904,585 to 905,871
_RS04130
HSERO_RS04135: HSERO_RS04135 - amidohydrolase, at 905,921 to 907,129
_RS04135
Position (kb) 904
905
906 Strain fitness (log2 ratio) -1
0
1
2
3 at 903.626 kb on - strand at 903.691 kb on - strand, within HSERO_RS04125 at 903.702 kb on + strand, within HSERO_RS04125 at 903.709 kb on - strand, within HSERO_RS04125 at 903.709 kb on - strand, within HSERO_RS04125 at 903.773 kb on - strand, within HSERO_RS04125 at 903.847 kb on - strand, within HSERO_RS04125 at 903.971 kb on + strand, within HSERO_RS04125 at 903.971 kb on + strand, within HSERO_RS04125 at 904.044 kb on - strand, within HSERO_RS04125 at 904.538 kb on + strand at 904.538 kb on + strand at 904.538 kb on + strand at 904.538 kb on + strand at 904.538 kb on + strand at 904.538 kb on + strand at 904.543 kb on + strand at 904.546 kb on - strand at 904.546 kb on - strand at 904.577 kb on - strand at 904.591 kb on - strand at 904.605 kb on - strand at 904.605 kb on - strand at 904.653 kb on - strand at 904.752 kb on - strand, within HSERO_RS04130 at 904.889 kb on + strand, within HSERO_RS04130 at 904.899 kb on + strand, within HSERO_RS04130 at 905.202 kb on - strand, within HSERO_RS04130 at 905.369 kb on + strand, within HSERO_RS04130 at 905.377 kb on - strand, within HSERO_RS04130 at 905.505 kb on - strand, within HSERO_RS04130 at 905.622 kb on + strand, within HSERO_RS04130 at 905.850 kb on + strand at 905.867 kb on + strand at 906.177 kb on - strand, within HSERO_RS04135 at 906.519 kb on + strand, within HSERO_RS04135 at 906.551 kb on - strand, within HSERO_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 903,626 - -0.1 903,691 - HSERO_RS04125 0.16 -0.1 903,702 + HSERO_RS04125 0.17 -0.5 903,709 - HSERO_RS04125 0.18 +0.1 903,709 - HSERO_RS04125 0.18 +0.2 903,773 - HSERO_RS04125 0.25 -0.3 903,847 - HSERO_RS04125 0.33 +1.2 903,971 + HSERO_RS04125 0.46 +0.7 903,971 + HSERO_RS04125 0.46 +0.2 904,044 - HSERO_RS04125 0.54 -0.0 904,538 + +0.2 904,538 + +0.5 904,538 + +1.7 904,538 + +0.7 904,538 + +0.3 904,538 + -0.7 904,543 + -0.8 904,546 - +0.6 904,546 - -0.3 904,577 - -0.0 904,591 - +1.1 904,605 - +0.7 904,605 - +1.3 904,653 - -0.2 904,752 - HSERO_RS04130 0.13 +0.4 904,889 + HSERO_RS04130 0.24 -0.6 904,899 + HSERO_RS04130 0.24 +1.2 905,202 - HSERO_RS04130 0.48 -0.6 905,369 + HSERO_RS04130 0.61 +3.4 905,377 - HSERO_RS04130 0.62 -0.6 905,505 - HSERO_RS04130 0.71 +0.5 905,622 + HSERO_RS04130 0.81 -0.3 905,850 + -0.2 905,867 + -0.5 906,177 - HSERO_RS04135 0.21 +0.7 906,519 + HSERO_RS04135 0.49 -0.7 906,551 - HSERO_RS04135 0.52 +0.8
Or see this region's nucleotide sequence