Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02750 and HSERO_RS02755 are separated by 70 nucleotides HSERO_RS02755 and HSERO_RS02760 are separated by 65 nucleotides HSERO_RS02760 and HSERO_RS02765 are separated by 129 nucleotides
HSERO_RS02750: HSERO_RS02750 - divalent cation transporter, at 609,610 to 610,461
_RS02750
HSERO_RS02755: HSERO_RS02755 - hypothetical protein, at 610,532 to 611,089
_RS02755
HSERO_RS02760: HSERO_RS02760 - hypothetical protein, at 611,155 to 611,646
_RS02760
HSERO_RS02765: HSERO_RS02765 - general stress protein, at 611,776 to 611,985
_RS02765
Position (kb) 610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.661 kb on - strand at 609.679 kb on + strand at 609.679 kb on + strand at 609.685 kb on + strand at 609.985 kb on + strand, within HSERO_RS02750 at 609.993 kb on - strand, within HSERO_RS02750 at 609.999 kb on - strand, within HSERO_RS02750 at 609.999 kb on - strand, within HSERO_RS02750 at 610.134 kb on - strand, within HSERO_RS02750 at 610.164 kb on + strand, within HSERO_RS02750 at 610.191 kb on - strand, within HSERO_RS02750 at 610.253 kb on - strand, within HSERO_RS02750 at 610.613 kb on - strand, within HSERO_RS02755 at 610.693 kb on + strand, within HSERO_RS02755 at 610.806 kb on - strand, within HSERO_RS02755 at 610.806 kb on - strand, within HSERO_RS02755 at 610.889 kb on - strand, within HSERO_RS02755 at 610.932 kb on + strand, within HSERO_RS02755 at 610.932 kb on + strand, within HSERO_RS02755 at 611.019 kb on + strand, within HSERO_RS02755 at 611.268 kb on - strand, within HSERO_RS02760 at 611.524 kb on + strand, within HSERO_RS02760 at 611.615 kb on - strand at 611.802 kb on - strand, within HSERO_RS02765 at 612.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 609,661 - +0.6 609,679 + -0.4 609,679 + +0.2 609,685 + -0.6 609,985 + HSERO_RS02750 0.44 +0.2 609,993 - HSERO_RS02750 0.45 -0.7 609,999 - HSERO_RS02750 0.46 +2.1 609,999 - HSERO_RS02750 0.46 +0.7 610,134 - HSERO_RS02750 0.62 -0.8 610,164 + HSERO_RS02750 0.65 -0.2 610,191 - HSERO_RS02750 0.68 +0.6 610,253 - HSERO_RS02750 0.75 +0.1 610,613 - HSERO_RS02755 0.15 +0.0 610,693 + HSERO_RS02755 0.29 -2.1 610,806 - HSERO_RS02755 0.49 -0.0 610,806 - HSERO_RS02755 0.49 -0.8 610,889 - HSERO_RS02755 0.64 -0.7 610,932 + HSERO_RS02755 0.72 -0.0 610,932 + HSERO_RS02755 0.72 -0.1 611,019 + HSERO_RS02755 0.87 +0.6 611,268 - HSERO_RS02760 0.23 -0.1 611,524 + HSERO_RS02760 0.75 -0.0 611,615 - +1.7 611,802 - HSERO_RS02765 0.12 +0.5 612,071 - +0.1
Or see this region's nucleotide sequence