Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01555 and HSERO_RS01560 are separated by 33 nucleotides HSERO_RS01560 and HSERO_RS01565 are separated by 99 nucleotides
HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041
_RS01555
HSERO_RS01560: HSERO_RS01560 - transporter, at 344,075 to 347,290
_RS01560
HSERO_RS01565: HSERO_RS01565 - hemolysin secretion protein D, at 347,390 to 348,589
_RS01565
Position (kb) 344
345
346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.380 kb on - strand, within HSERO_RS01555 at 343.422 kb on + strand at 343.440 kb on + strand, within HSERO_RS01555 at 343.467 kb on + strand, within HSERO_RS01555 at 343.472 kb on + strand, within HSERO_RS01555 at 343.477 kb on + strand, within HSERO_RS01555 at 343.565 kb on - strand, within HSERO_RS01555 at 343.705 kb on - strand, within HSERO_RS01555 at 343.742 kb on - strand, within HSERO_RS01555 at 343.776 kb on - strand, within HSERO_RS01555 at 343.834 kb on - strand, within HSERO_RS01555 at 343.845 kb on + strand, within HSERO_RS01555 at 343.942 kb on - strand at 344.178 kb on + strand at 344.212 kb on - strand at 344.246 kb on - strand at 344.316 kb on + strand at 344.347 kb on - strand at 344.478 kb on - strand, within HSERO_RS01560 at 344.485 kb on + strand, within HSERO_RS01560 at 344.526 kb on - strand, within HSERO_RS01560 at 344.625 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 344.678 kb on + strand, within HSERO_RS01560 at 345.024 kb on + strand, within HSERO_RS01560 at 345.032 kb on - strand, within HSERO_RS01560 at 345.050 kb on + strand, within HSERO_RS01560 at 345.063 kb on + strand, within HSERO_RS01560 at 345.084 kb on + strand, within HSERO_RS01560 at 345.174 kb on + strand, within HSERO_RS01560 at 345.494 kb on + strand, within HSERO_RS01560 at 345.592 kb on + strand, within HSERO_RS01560 at 345.600 kb on - strand, within HSERO_RS01560 at 345.833 kb on + strand, within HSERO_RS01560 at 345.974 kb on + strand, within HSERO_RS01560 at 346.152 kb on + strand, within HSERO_RS01560 at 346.232 kb on - strand, within HSERO_RS01560 at 346.234 kb on + strand, within HSERO_RS01560 at 346.242 kb on + strand, within HSERO_RS01560 at 346.252 kb on + strand, within HSERO_RS01560 at 346.474 kb on + strand, within HSERO_RS01560 at 346.727 kb on - strand, within HSERO_RS01560 at 346.856 kb on + strand, within HSERO_RS01560 at 346.890 kb on + strand, within HSERO_RS01560 at 346.958 kb on + strand, within HSERO_RS01560 at 346.979 kb on - strand at 347.081 kb on - strand at 347.086 kb on - strand at 347.332 kb on - strand at 347.335 kb on + strand at 347.401 kb on - strand at 347.451 kb on - strand at 347.538 kb on - strand, within HSERO_RS01565 at 347.564 kb on - strand, within HSERO_RS01565 at 347.678 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.773 kb on - strand, within HSERO_RS01565 at 347.774 kb on + strand, within HSERO_RS01565 at 347.782 kb on - strand, within HSERO_RS01565 at 347.797 kb on - strand, within HSERO_RS01565 at 347.836 kb on - strand, within HSERO_RS01565 at 347.969 kb on - strand, within HSERO_RS01565 at 347.976 kb on + strand, within HSERO_RS01565 at 348.189 kb on - strand, within HSERO_RS01565
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 343,380 - HSERO_RS01555 0.56 -0.3 343,422 + +0.9 343,440 + HSERO_RS01555 0.60 -0.5 343,467 + HSERO_RS01555 0.62 +0.5 343,472 + HSERO_RS01555 0.62 +0.4 343,477 + HSERO_RS01555 0.63 +0.6 343,565 - HSERO_RS01555 0.69 -2.3 343,705 - HSERO_RS01555 0.78 -0.1 343,742 - HSERO_RS01555 0.80 +0.1 343,776 - HSERO_RS01555 0.82 +1.1 343,834 - HSERO_RS01555 0.86 -0.0 343,845 + HSERO_RS01555 0.87 +2.0 343,942 - -0.4 344,178 + -0.8 344,212 - -1.1 344,246 - +0.7 344,316 + +0.1 344,347 - +0.4 344,478 - HSERO_RS01560 0.13 +1.3 344,485 + HSERO_RS01560 0.13 +0.8 344,526 - HSERO_RS01560 0.14 +1.0 344,625 + HSERO_RS01560 0.17 -0.0 344,678 + HSERO_RS01560 0.19 -0.2 344,678 + HSERO_RS01560 0.19 -0.4 345,024 + HSERO_RS01560 0.30 +0.7 345,032 - HSERO_RS01560 0.30 +0.2 345,050 + HSERO_RS01560 0.30 -1.2 345,063 + HSERO_RS01560 0.31 -0.1 345,084 + HSERO_RS01560 0.31 -1.0 345,174 + HSERO_RS01560 0.34 +0.3 345,494 + HSERO_RS01560 0.44 +0.3 345,592 + HSERO_RS01560 0.47 -0.7 345,600 - HSERO_RS01560 0.47 -0.2 345,833 + HSERO_RS01560 0.55 +0.4 345,974 + HSERO_RS01560 0.59 +0.8 346,152 + HSERO_RS01560 0.65 -0.0 346,232 - HSERO_RS01560 0.67 +0.3 346,234 + HSERO_RS01560 0.67 +0.2 346,242 + HSERO_RS01560 0.67 +0.5 346,252 + HSERO_RS01560 0.68 +0.8 346,474 + HSERO_RS01560 0.75 +0.1 346,727 - HSERO_RS01560 0.82 +0.2 346,856 + HSERO_RS01560 0.86 +2.3 346,890 + HSERO_RS01560 0.88 -0.2 346,958 + HSERO_RS01560 0.90 +0.1 346,979 - +1.5 347,081 - +0.2 347,086 - +0.2 347,332 - +0.0 347,335 + -1.7 347,401 - +1.0 347,451 - -0.1 347,538 - HSERO_RS01565 0.12 +0.2 347,564 - HSERO_RS01565 0.14 -0.0 347,678 - HSERO_RS01565 0.24 -0.5 347,773 - HSERO_RS01565 0.32 -0.5 347,773 - HSERO_RS01565 0.32 -0.2 347,774 + HSERO_RS01565 0.32 -0.7 347,782 - HSERO_RS01565 0.33 -1.6 347,797 - HSERO_RS01565 0.34 +0.0 347,836 - HSERO_RS01565 0.37 +0.0 347,969 - HSERO_RS01565 0.48 -0.6 347,976 + HSERO_RS01565 0.49 -0.6 348,189 - HSERO_RS01565 0.67 -0.0
Or see this region's nucleotide sequence