Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS31405 and BPHYT_RS31410 are separated by 32 nucleotides BPHYT_RS31410 and BPHYT_RS31415 are separated by 23 nucleotides BPHYT_RS31415 and BPHYT_RS31420 are separated by 54 nucleotides
BPHYT_RS31405: BPHYT_RS31405 - short-chain dehydrogenase, at 2,600,914 to 2,601,597
_RS31405
BPHYT_RS31410: BPHYT_RS31410 - D-amino acid oxidase, at 2,601,630 to 2,602,970
_RS31410
BPHYT_RS31415: BPHYT_RS31415 - amino acid ABC transporter permease, at 2,602,994 to 2,603,791
_RS31415
BPHYT_RS31420: BPHYT_RS31420 - ABC transporter substrate-binding protein, at 2,603,846 to 2,604,658
_RS31420
Position (kb) 2601
2602
2603 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 2600.641 kb on + strand at 2600.642 kb on - strand at 2600.668 kb on - strand at 2601.290 kb on - strand, within BPHYT_RS31405 at 2602.660 kb on - strand, within BPHYT_RS31410 at 2602.663 kb on + strand, within BPHYT_RS31410 at 2602.881 kb on + strand at 2603.272 kb on - strand, within BPHYT_RS31415
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 2,600,641 + -2.9 2,600,642 - +0.0 2,600,668 - +0.9 2,601,290 - BPHYT_RS31405 0.55 +0.9 2,602,660 - BPHYT_RS31410 0.77 +0.6 2,602,663 + BPHYT_RS31410 0.77 +0.5 2,602,881 + +0.4 2,603,272 - BPHYT_RS31415 0.35 +0.8
Or see this region's nucleotide sequence