Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23170 and BPHYT_RS23175 are separated by 115 nucleotides BPHYT_RS23175 and BPHYT_RS23180 are separated by 21 nucleotides BPHYT_RS23180 and BPHYT_RS23185 are separated by 41 nucleotides
BPHYT_RS23170: BPHYT_RS23170 - XRE family transcriptional regulator, at 765,242 to 765,793
_RS23170
BPHYT_RS23175: BPHYT_RS23175 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 765,909 to 767,402
_RS23175
BPHYT_RS23180: BPHYT_RS23180 - hypothetical protein, at 767,424 to 767,609
_RS23180
BPHYT_RS23185: BPHYT_RS23185 - MFS transporter, at 767,651 to 768,847
_RS23185
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -2
-1
0
1 at 764.979 kb on - strand at 765.515 kb on + strand, within BPHYT_RS23170 at 765.699 kb on - strand, within BPHYT_RS23170 at 766.668 kb on + strand, within BPHYT_RS23175 at 766.892 kb on + strand, within BPHYT_RS23175 at 767.365 kb on - strand at 767.756 kb on - strand at 767.884 kb on - strand, within BPHYT_RS23185 at 768.197 kb on + strand, within BPHYT_RS23185
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 764,979 - +1.1 765,515 + BPHYT_RS23170 0.49 +0.4 765,699 - BPHYT_RS23170 0.83 -0.6 766,668 + BPHYT_RS23175 0.51 -0.8 766,892 + BPHYT_RS23175 0.66 -2.2 767,365 - -0.4 767,756 - -1.4 767,884 - BPHYT_RS23185 0.19 +1.1 768,197 + BPHYT_RS23185 0.46 +0.8
Or see this region's nucleotide sequence