Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22450 and BPHYT_RS22455 overlap by 4 nucleotides BPHYT_RS22455 and BPHYT_RS22460 are separated by 41 nucleotides
BPHYT_RS22450: BPHYT_RS22450 - phosphonate ABC transporter permease, at 592,397 to 593,239
_RS22450
BPHYT_RS22455: BPHYT_RS22455 - phosphonate ABC transporter substrate-binding protein, at 593,236 to 594,213
_RS22455
BPHYT_RS22460: BPHYT_RS22460 - phosphonate ABC transporter ATP-binidng protein, at 594,255 to 595,160
_RS22460
Position (kb) 593
594
595 Strain fitness (log2 ratio) -1
0
1 at 592.378 kb on + strand at 592.378 kb on + strand at 592.378 kb on + strand at 592.379 kb on - strand at 592.489 kb on - strand, within BPHYT_RS22450 at 592.513 kb on - strand, within BPHYT_RS22450 at 592.590 kb on - strand, within BPHYT_RS22450 at 592.968 kb on + strand, within BPHYT_RS22450 at 592.968 kb on + strand, within BPHYT_RS22450 at 592.969 kb on - strand, within BPHYT_RS22450 at 592.969 kb on - strand, within BPHYT_RS22450 at 592.969 kb on - strand, within BPHYT_RS22450 at 592.969 kb on - strand, within BPHYT_RS22450 at 594.011 kb on + strand, within BPHYT_RS22455 at 595.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 592,378 + +0.7 592,378 + -0.4 592,378 + -0.5 592,379 - -0.3 592,489 - BPHYT_RS22450 0.11 +0.7 592,513 - BPHYT_RS22450 0.14 +0.5 592,590 - BPHYT_RS22450 0.23 +0.3 592,968 + BPHYT_RS22450 0.68 +1.5 592,968 + BPHYT_RS22450 0.68 -0.1 592,969 - BPHYT_RS22450 0.68 +0.6 592,969 - BPHYT_RS22450 0.68 +0.5 592,969 - BPHYT_RS22450 0.68 +1.2 592,969 - BPHYT_RS22450 0.68 +1.4 594,011 + BPHYT_RS22455 0.79 -1.0 595,165 - -0.1
Or see this region's nucleotide sequence