Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21840 and BPHYT_RS21845 are separated by 72 nucleotides BPHYT_RS21845 and BPHYT_RS21850 are separated by 232 nucleotides BPHYT_RS21850 and BPHYT_RS21855 are separated by 98 nucleotides
BPHYT_RS21840: BPHYT_RS21840 - hypothetical protein, at 454,306 to 455,337
_RS21840
BPHYT_RS21845: BPHYT_RS21845 - hypothetical protein, at 455,410 to 455,940
_RS21845
BPHYT_RS21850: BPHYT_RS21850 - pyrimidine reductase, at 456,173 to 456,850
_RS21850
BPHYT_RS21855: BPHYT_RS21855 - hypothetical protein, at 456,949 to 457,716
_RS21855
Position (kb) 456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.336 kb on - strand at 455.489 kb on - strand, within BPHYT_RS21845 at 455.606 kb on - strand, within BPHYT_RS21845 at 455.690 kb on - strand, within BPHYT_RS21845 at 455.701 kb on + strand, within BPHYT_RS21845 at 455.702 kb on - strand, within BPHYT_RS21845 at 455.794 kb on + strand, within BPHYT_RS21845 at 455.842 kb on + strand, within BPHYT_RS21845 at 455.877 kb on + strand, within BPHYT_RS21845 at 456.182 kb on + strand at 456.183 kb on - strand at 456.184 kb on + strand at 456.184 kb on + strand at 456.184 kb on + strand at 456.185 kb on - strand at 456.185 kb on - strand at 456.264 kb on - strand, within BPHYT_RS21850 at 456.264 kb on - strand, within BPHYT_RS21850 at 456.416 kb on + strand, within BPHYT_RS21850 at 456.528 kb on - strand, within BPHYT_RS21850 at 456.528 kb on - strand, within BPHYT_RS21850 at 456.528 kb on - strand, within BPHYT_RS21850 at 457.227 kb on - strand, within BPHYT_RS21855 at 457.285 kb on - strand, within BPHYT_RS21855 at 457.285 kb on - strand, within BPHYT_RS21855 at 457.559 kb on + strand, within BPHYT_RS21855 at 457.560 kb on - strand, within BPHYT_RS21855 at 457.560 kb on - strand at 457.560 kb on - strand, within BPHYT_RS21855 at 457.787 kb on + strand at 457.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 455,336 - +0.4 455,489 - BPHYT_RS21845 0.15 -0.2 455,606 - BPHYT_RS21845 0.37 -0.0 455,690 - BPHYT_RS21845 0.53 +0.3 455,701 + BPHYT_RS21845 0.55 +0.4 455,702 - BPHYT_RS21845 0.55 -1.9 455,794 + BPHYT_RS21845 0.72 -0.0 455,842 + BPHYT_RS21845 0.81 -0.7 455,877 + BPHYT_RS21845 0.88 +0.9 456,182 + +0.6 456,183 - +1.6 456,184 + +2.0 456,184 + +0.1 456,184 + -3.5 456,185 - +0.7 456,185 - -0.4 456,264 - BPHYT_RS21850 0.13 -0.7 456,264 - BPHYT_RS21850 0.13 -0.3 456,416 + BPHYT_RS21850 0.36 -3.4 456,528 - BPHYT_RS21850 0.52 -1.5 456,528 - BPHYT_RS21850 0.52 -0.2 456,528 - BPHYT_RS21850 0.52 -0.5 457,227 - BPHYT_RS21855 0.36 +0.9 457,285 - BPHYT_RS21855 0.44 +0.4 457,285 - BPHYT_RS21855 0.44 -0.6 457,559 + BPHYT_RS21855 0.79 -0.6 457,560 - BPHYT_RS21855 0.80 -1.3 457,560 - -1.6 457,560 - BPHYT_RS21855 0.80 +0.7 457,787 + -0.7 457,788 - +0.0
Or see this region's nucleotide sequence