Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03975 and BPHYT_RS03980 are separated by 87 nucleotides BPHYT_RS03980 and BPHYT_RS03985 are separated by 53 nucleotides
BPHYT_RS03975: BPHYT_RS03975 - AraC family transcriptional regulator, at 903,658 to 904,641
_RS03975
BPHYT_RS03980: BPHYT_RS03980 - mannose-1-phosphate guanyltransferase, at 904,729 to 906,276
_RS03980
BPHYT_RS03985: BPHYT_RS03985 - undecaprenyl-phosphate glucose phosphotransferase, at 906,330 to 907,715
_RS03985
Position (kb) 904
905
906
907 Strain fitness (log2 ratio) -1
0
1 at 903.835 kb on + strand, within BPHYT_RS03975 at 903.925 kb on + strand, within BPHYT_RS03975 at 903.947 kb on - strand, within BPHYT_RS03975 at 904.078 kb on + strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.444 kb on - strand, within BPHYT_RS03975 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.567 kb on - strand, within BPHYT_RS03980 at 906.259 kb on + strand at 906.259 kb on + strand at 906.504 kb on + strand, within BPHYT_RS03985 at 906.551 kb on - strand, within BPHYT_RS03985 at 906.780 kb on - strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.909 kb on + strand, within BPHYT_RS03985 at 906.910 kb on - strand, within BPHYT_RS03985 at 906.911 kb on + strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985 at 906.912 kb on - strand, within BPHYT_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 903,835 + BPHYT_RS03975 0.18 -0.0 903,925 + BPHYT_RS03975 0.27 +0.0 903,947 - BPHYT_RS03975 0.29 +0.5 904,078 + BPHYT_RS03975 0.43 -0.5 904,079 - BPHYT_RS03975 0.43 +0.6 904,079 - BPHYT_RS03975 0.43 +0.9 904,444 - BPHYT_RS03975 0.80 -0.2 905,386 + BPHYT_RS03980 0.42 -0.1 905,386 + BPHYT_RS03980 0.42 +1.1 905,387 - BPHYT_RS03980 0.43 +0.9 905,387 - BPHYT_RS03980 0.43 -0.2 905,512 + BPHYT_RS03980 0.51 +1.5 905,512 + BPHYT_RS03980 0.51 -0.0 905,567 - BPHYT_RS03980 0.54 +0.6 906,259 + -1.1 906,259 + -0.1 906,504 + BPHYT_RS03985 0.13 -0.4 906,551 - BPHYT_RS03985 0.16 -1.3 906,780 - BPHYT_RS03985 0.32 -0.6 906,909 + BPHYT_RS03985 0.42 +0.3 906,909 + BPHYT_RS03985 0.42 -1.3 906,910 - BPHYT_RS03985 0.42 +0.1 906,911 + BPHYT_RS03985 0.42 -0.5 906,912 - BPHYT_RS03985 0.42 -0.8 906,912 - BPHYT_RS03985 0.42 -0.8
Or see this region's nucleotide sequence