Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03900 and BPHYT_RS03905 are separated by 251 nucleotides BPHYT_RS03905 and BPHYT_RS03910 are separated by 60 nucleotides BPHYT_RS03910 and BPHYT_RS03915 are separated by 157 nucleotides BPHYT_RS03915 and BPHYT_RS03920 are separated by 27 nucleotides
BPHYT_RS03900: BPHYT_RS03900 - phospholipid-binding protein, at 884,354 to 884,707
_RS03900
BPHYT_RS03905: BPHYT_RS03905 - hypothetical protein, at 884,959 to 885,207
_RS03905
BPHYT_RS03910: BPHYT_RS03910 - membrane protein, at 885,268 to 886,056
_RS03910
BPHYT_RS03915: BPHYT_RS03915 - hypothetical protein, at 886,214 to 886,465
_RS03915
BPHYT_RS03920: BPHYT_RS03920 - lysine transporter LysE, at 886,493 to 887,134
_RS03920
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 884.317 kb on + strand at 884.420 kb on + strand, within BPHYT_RS03900 at 884.706 kb on - strand at 884.706 kb on - strand at 884.921 kb on - strand at 884.981 kb on - strand at 884.981 kb on - strand at 884.983 kb on - strand at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.140 kb on - strand, within BPHYT_RS03905 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.683 kb on - strand, within BPHYT_RS03910 at 885.897 kb on - strand, within BPHYT_RS03910 at 886.029 kb on - strand at 886.220 kb on - strand at 886.220 kb on - strand at 886.275 kb on + strand, within BPHYT_RS03915 at 886.275 kb on + strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.278 kb on + strand, within BPHYT_RS03915 at 886.278 kb on + strand, within BPHYT_RS03915 at 886.279 kb on - strand, within BPHYT_RS03915 at 886.279 kb on - strand, within BPHYT_RS03915 at 886.327 kb on + strand, within BPHYT_RS03915 at 886.328 kb on - strand, within BPHYT_RS03915 at 886.338 kb on + strand, within BPHYT_RS03915 at 886.774 kb on - strand, within BPHYT_RS03920 at 886.878 kb on + strand, within BPHYT_RS03920 at 886.879 kb on - strand, within BPHYT_RS03920 at 886.921 kb on - strand, within BPHYT_RS03920
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 884,317 + -0.3 884,420 + BPHYT_RS03900 0.19 +1.4 884,706 - +0.2 884,706 - +0.0 884,921 - +0.1 884,981 - +0.3 884,981 - +0.3 884,983 - +0.3 885,139 + BPHYT_RS03905 0.72 +3.1 885,139 + BPHYT_RS03905 0.72 +1.6 885,139 + BPHYT_RS03905 0.72 +1.6 885,139 + BPHYT_RS03905 0.72 -0.1 885,139 + BPHYT_RS03905 0.72 -0.3 885,140 - BPHYT_RS03905 0.73 -0.5 885,356 + BPHYT_RS03910 0.11 -1.6 885,356 + BPHYT_RS03910 0.11 -1.1 885,356 + BPHYT_RS03910 0.11 -2.0 885,357 - BPHYT_RS03910 0.11 -0.9 885,357 - BPHYT_RS03910 0.11 -1.4 885,682 + BPHYT_RS03910 0.52 -3.1 885,682 + BPHYT_RS03910 0.52 -1.5 885,683 - BPHYT_RS03910 0.53 -0.0 885,897 - BPHYT_RS03910 0.80 +0.5 886,029 - -1.1 886,220 - -0.0 886,220 - +1.8 886,275 + BPHYT_RS03915 0.24 +0.8 886,275 + BPHYT_RS03915 0.24 -0.8 886,276 - BPHYT_RS03915 0.25 -1.3 886,276 - BPHYT_RS03915 0.25 -0.3 886,276 - BPHYT_RS03915 0.25 -3.0 886,278 + BPHYT_RS03915 0.25 -0.0 886,278 + BPHYT_RS03915 0.25 -0.9 886,279 - BPHYT_RS03915 0.26 +2.9 886,279 - BPHYT_RS03915 0.26 +0.7 886,327 + BPHYT_RS03915 0.45 +0.4 886,328 - BPHYT_RS03915 0.45 +0.1 886,338 + BPHYT_RS03915 0.49 -0.3 886,774 - BPHYT_RS03920 0.44 -0.0 886,878 + BPHYT_RS03920 0.60 +1.3 886,879 - BPHYT_RS03920 0.60 +0.7 886,921 - BPHYT_RS03920 0.67 -0.1
Or see this region's nucleotide sequence