Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03890 and BPHYT_RS03895 are separated by 8 nucleotides BPHYT_RS03895 and BPHYT_RS03900 are separated by 353 nucleotides BPHYT_RS03900 and BPHYT_RS03905 are separated by 251 nucleotides BPHYT_RS03905 and BPHYT_RS03910 are separated by 60 nucleotides
BPHYT_RS03890: BPHYT_RS03890 - C4-dicarboxylate ABC transporter substrate-binding protein, at 882,298 to 883,791
_RS03890
BPHYT_RS03895: BPHYT_RS03895 - hypothetical protein, at 883,800 to 884,000
_RS03895
BPHYT_RS03900: BPHYT_RS03900 - phospholipid-binding protein, at 884,354 to 884,707
_RS03900
BPHYT_RS03905: BPHYT_RS03905 - hypothetical protein, at 884,959 to 885,207
_RS03905
BPHYT_RS03910: BPHYT_RS03910 - membrane protein, at 885,268 to 886,056
_RS03910
Position (kb) 884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.397 kb on + strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.398 kb on - strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.574 kb on + strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.575 kb on - strand, within BPHYT_RS03890 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.888 kb on + strand, within BPHYT_RS03895 at 883.998 kb on + strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 883.999 kb on - strand at 884.011 kb on + strand at 884.027 kb on + strand at 884.058 kb on + strand at 884.059 kb on - strand at 884.059 kb on - strand at 884.115 kb on + strand at 884.115 kb on + strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.116 kb on - strand at 884.232 kb on + strand at 884.317 kb on + strand at 884.420 kb on + strand, within BPHYT_RS03900 at 884.706 kb on - strand at 884.706 kb on - strand at 884.921 kb on - strand at 884.981 kb on - strand at 884.981 kb on - strand at 884.983 kb on - strand at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.139 kb on + strand, within BPHYT_RS03905 at 885.140 kb on - strand, within BPHYT_RS03905 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.356 kb on + strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.357 kb on - strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.683 kb on - strand, within BPHYT_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 883,397 + BPHYT_RS03890 0.74 -1.4 883,397 + BPHYT_RS03890 0.74 -2.2 883,398 - BPHYT_RS03890 0.74 +0.3 883,398 - BPHYT_RS03890 0.74 +0.7 883,574 + BPHYT_RS03890 0.85 -2.7 883,574 + BPHYT_RS03890 0.85 -1.1 883,575 - BPHYT_RS03890 0.85 +1.0 883,575 - BPHYT_RS03890 0.85 +0.0 883,888 + BPHYT_RS03895 0.44 -0.0 883,888 + BPHYT_RS03895 0.44 -0.7 883,888 + BPHYT_RS03895 0.44 +0.3 883,998 + +1.0 883,999 - +1.0 883,999 - -0.6 883,999 - -1.2 883,999 - +1.2 883,999 - +3.5 884,011 + +0.2 884,027 + -1.8 884,058 + -0.1 884,059 - +1.0 884,059 - +2.5 884,115 + +1.1 884,115 + -0.0 884,116 - +0.6 884,116 - +0.3 884,116 - +1.1 884,232 + -1.3 884,317 + -0.3 884,420 + BPHYT_RS03900 0.19 +1.4 884,706 - +0.2 884,706 - +0.0 884,921 - +0.1 884,981 - +0.3 884,981 - +0.3 884,983 - +0.3 885,139 + BPHYT_RS03905 0.72 +3.1 885,139 + BPHYT_RS03905 0.72 +1.6 885,139 + BPHYT_RS03905 0.72 +1.6 885,139 + BPHYT_RS03905 0.72 -0.1 885,139 + BPHYT_RS03905 0.72 -0.3 885,140 - BPHYT_RS03905 0.73 -0.5 885,356 + BPHYT_RS03910 0.11 -1.6 885,356 + BPHYT_RS03910 0.11 -1.1 885,356 + BPHYT_RS03910 0.11 -2.0 885,357 - BPHYT_RS03910 0.11 -0.9 885,357 - BPHYT_RS03910 0.11 -1.4 885,682 + BPHYT_RS03910 0.52 -3.1 885,682 + BPHYT_RS03910 0.52 -1.5 885,683 - BPHYT_RS03910 0.53 -0.0
Or see this region's nucleotide sequence