Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02135 and BPHYT_RS02140 are separated by 347 nucleotides BPHYT_RS02140 and BPHYT_RS02145 are separated by 136 nucleotides
BPHYT_RS02135: BPHYT_RS02135 - glyoxylate reductase, at 489,128 to 490,069
_RS02135
BPHYT_RS02140: BPHYT_RS02140 - alpha/beta hydrolase, at 490,417 to 491,019
_RS02140
BPHYT_RS02145: BPHYT_RS02145 - sulfate ABC transporter substrate-binding protein, at 491,156 to 492,181
_RS02145
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1
2 at 489.763 kb on - strand, within BPHYT_RS02135 at 489.818 kb on - strand, within BPHYT_RS02135 at 490.183 kb on + strand at 490.184 kb on - strand at 490.184 kb on - strand at 490.189 kb on + strand at 490.574 kb on + strand, within BPHYT_RS02140 at 490.575 kb on - strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.638 kb on + strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.639 kb on - strand, within BPHYT_RS02140 at 490.663 kb on + strand, within BPHYT_RS02140 at 490.664 kb on - strand, within BPHYT_RS02140 at 490.685 kb on - strand, within BPHYT_RS02140 at 490.890 kb on + strand, within BPHYT_RS02140 at 490.891 kb on - strand, within BPHYT_RS02140 at 491.000 kb on + strand at 491.000 kb on + strand at 491.077 kb on + strand at 491.078 kb on - strand at 491.291 kb on + strand, within BPHYT_RS02145 at 491.292 kb on - strand, within BPHYT_RS02145 at 491.324 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.421 kb on + strand, within BPHYT_RS02145 at 491.649 kb on - strand, within BPHYT_RS02145 at 491.654 kb on + strand, within BPHYT_RS02145 at 491.967 kb on - strand, within BPHYT_RS02145
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB remove 489,763 - BPHYT_RS02135 0.67 +1.3 489,818 - BPHYT_RS02135 0.73 -0.3 490,183 + -0.3 490,184 - -0.6 490,184 - -0.5 490,189 + -1.1 490,574 + BPHYT_RS02140 0.26 +0.3 490,575 - BPHYT_RS02140 0.26 -0.1 490,638 + BPHYT_RS02140 0.37 +0.4 490,638 + BPHYT_RS02140 0.37 -1.4 490,639 - BPHYT_RS02140 0.37 -0.6 490,639 - BPHYT_RS02140 0.37 -0.4 490,663 + BPHYT_RS02140 0.41 +0.0 490,664 - BPHYT_RS02140 0.41 +0.7 490,685 - BPHYT_RS02140 0.44 +0.6 490,890 + BPHYT_RS02140 0.78 +1.3 490,891 - BPHYT_RS02140 0.79 +0.3 491,000 + -1.1 491,000 + +0.5 491,077 + +0.3 491,078 - +2.3 491,291 + BPHYT_RS02145 0.13 +0.5 491,292 - BPHYT_RS02145 0.13 -0.0 491,324 + BPHYT_RS02145 0.16 +0.5 491,421 + BPHYT_RS02145 0.26 +1.4 491,421 + BPHYT_RS02145 0.26 +0.8 491,649 - BPHYT_RS02145 0.48 +1.7 491,654 + BPHYT_RS02145 0.49 -0.1 491,967 - BPHYT_RS02145 0.79 -2.3
Or see this region's nucleotide sequence