Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03007 and SMc03008 are separated by 5 nucleotides SMc03008 and SMc03009 overlap by 4 nucleotides SMc03009 and SMc03010 overlap by 4 nucleotides
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
SMc03008: SMc03008 - chemotaxis protein, at 706,764 to 707,231
SMc03008
SMc03009: SMc03009 - chemotaxis protein methyltransferase, at 707,228 to 708,136
SMc03009
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
Position (kb) 707
708
709 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 706.596 kb on - strand at 706.596 kb on - strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.618 kb on + strand at 706.619 kb on - strand at 706.619 kb on - strand at 706.689 kb on - strand at 707.161 kb on + strand, within SMc03008 at 707.185 kb on + strand at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.336 kb on + strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.355 kb on - strand, within SMc03009 at 707.385 kb on - strand, within SMc03009 at 707.575 kb on + strand, within SMc03009 at 707.693 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.029 kb on + strand, within SMc03009 at 708.032 kb on - strand, within SMc03009 at 708.099 kb on - strand at 708.222 kb on + strand at 708.223 kb on - strand at 708.397 kb on - strand, within SMc03010 at 708.471 kb on + strand, within SMc03010 at 708.808 kb on + strand, within SMc03010 at 708.846 kb on + strand, within SMc03010 at 709.087 kb on + strand at 709.087 kb on + strand at 709.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 706,596 - -0.1 706,596 - -2.9 706,618 + +0.8 706,618 + -2.6 706,618 + -2.4 706,618 + -0.3 706,618 + -4.0 706,619 - -0.1 706,619 - -1.1 706,689 - +0.2 707,161 + SMc03008 0.85 -0.0 707,185 + -0.4 707,336 + SMc03009 0.12 +3.0 707,336 + SMc03009 0.12 +2.0 707,336 + SMc03009 0.12 -3.6 707,355 - SMc03009 0.14 +0.7 707,355 - SMc03009 0.14 +1.6 707,385 - SMc03009 0.17 +0.1 707,575 + SMc03009 0.38 +0.1 707,693 + SMc03009 0.51 +1.4 708,029 + SMc03009 0.88 -0.1 708,029 + SMc03009 0.88 +0.0 708,029 + SMc03009 0.88 -2.5 708,032 - SMc03009 0.88 +0.4 708,099 - +0.1 708,222 + -1.3 708,223 - +0.5 708,397 - SMc03010 0.25 -1.3 708,471 + SMc03010 0.32 -0.2 708,808 + SMc03010 0.64 +0.3 708,846 + SMc03010 0.68 -1.7 709,087 + +1.8 709,087 + +1.2 709,088 - +2.4
Or see this region's nucleotide sequence