Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02432 and SMc02433 are separated by 79 nucleotides SMc02433 and SMc02434 are separated by 341 nucleotides
SMc02432: SMc02432 - hypothetical protein, at 2,812,170 to 2,814,110
SMc02432
SMc02433: SMc02433 - ATP-dependent protease, at 2,814,190 to 2,816,796
SMc02433
SMc02434: SMc02434 - hypothetical protein, at 2,817,138 to 2,817,782
SMc02434
Position (kb)
2814
2815
2816
2817 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2814.321 kb on - strand at 2814.509 kb on - strand, within SMc02433 at 2814.620 kb on + strand, within SMc02433 at 2814.620 kb on + strand, within SMc02433 at 2814.632 kb on - strand, within SMc02433 at 2814.730 kb on - strand, within SMc02433 at 2814.730 kb on - strand, within SMc02433 at 2814.833 kb on + strand, within SMc02433 at 2814.834 kb on - strand, within SMc02433 at 2814.834 kb on - strand, within SMc02433 at 2814.834 kb on - strand, within SMc02433 at 2814.881 kb on + strand, within SMc02433 at 2815.286 kb on + strand, within SMc02433 at 2815.655 kb on + strand, within SMc02433 at 2815.724 kb on + strand, within SMc02433 at 2815.758 kb on + strand, within SMc02433 at 2815.759 kb on - strand, within SMc02433 at 2816.303 kb on + strand, within SMc02433 at 2816.304 kb on - strand, within SMc02433 at 2816.304 kb on - strand, within SMc02433 at 2816.304 kb on - strand, within SMc02433 at 2816.479 kb on + strand, within SMc02433 at 2816.480 kb on - strand, within SMc02433 at 2816.552 kb on + strand at 2816.552 kb on + strand at 2816.553 kb on - strand at 2816.686 kb on + strand at 2816.686 kb on + strand at 2816.687 kb on - strand at 2816.687 kb on - strand at 2816.687 kb on - strand at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.739 kb on - strand at 2816.739 kb on - strand at 2816.739 kb on - strand at 2816.801 kb on + strand at 2816.837 kb on + strand at 2816.838 kb on - strand at 2816.882 kb on + strand at 2817.116 kb on + strand at 2817.116 kb on + strand at 2817.117 kb on - strand at 2817.117 kb on - strand at 2817.140 kb on - strand at 2817.140 kb on - strand at 2817.140 kb on - strand at 2817.140 kb on - strand at 2817.165 kb on - strand at 2817.418 kb on + strand, within SMc02434 at 2817.469 kb on + strand, within SMc02434 at 2817.470 kb on - strand, within SMc02434 at 2817.470 kb on - strand, within SMc02434
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,814,321 - -0.9 2,814,509 - SMc02433 0.12 +1.7 2,814,620 + SMc02433 0.16 -3.5 2,814,620 + SMc02433 0.16 -0.6 2,814,632 - SMc02433 0.17 -0.5 2,814,730 - SMc02433 0.21 -0.1 2,814,730 - SMc02433 0.21 +0.9 2,814,833 + SMc02433 0.25 +1.1 2,814,834 - SMc02433 0.25 +1.1 2,814,834 - SMc02433 0.25 +0.4 2,814,834 - SMc02433 0.25 -3.8 2,814,881 + SMc02433 0.27 +1.7 2,815,286 + SMc02433 0.42 -1.6 2,815,655 + SMc02433 0.56 -0.7 2,815,724 + SMc02433 0.59 -0.1 2,815,758 + SMc02433 0.60 +0.1 2,815,759 - SMc02433 0.60 -3.3 2,816,303 + SMc02433 0.81 +0.1 2,816,304 - SMc02433 0.81 +0.1 2,816,304 - SMc02433 0.81 +0.4 2,816,304 - SMc02433 0.81 +0.4 2,816,479 + SMc02433 0.88 -0.2 2,816,480 - SMc02433 0.88 +0.2 2,816,552 + +0.1 2,816,552 + -3.8 2,816,553 - +0.6 2,816,686 + -2.2 2,816,686 + +1.2 2,816,687 - -1.2 2,816,687 - -0.4 2,816,687 - -0.0 2,816,738 + +0.3 2,816,738 + +1.5 2,816,738 + -2.6 2,816,738 + -0.3 2,816,738 + +0.9 2,816,739 - +1.2 2,816,739 - -0.2 2,816,739 - +1.1 2,816,801 + +0.8 2,816,837 + +0.2 2,816,838 - -0.9 2,816,882 + -0.1 2,817,116 + +1.4 2,817,116 + +1.1 2,817,117 - +1.2 2,817,117 - +1.0 2,817,140 - +1.7 2,817,140 - +1.8 2,817,140 - +0.8 2,817,140 - +1.1 2,817,165 - +1.3 2,817,418 + SMc02434 0.43 +1.0 2,817,469 + SMc02434 0.51 +1.6 2,817,470 - SMc02434 0.51 +0.3 2,817,470 - SMc02434 0.51 +2.8
Or see this region's nucleotide sequence