Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03070 and SMc00761 are separated by 196 nucleotides SMc00761 and SMc00762 are separated by 16 nucleotides
SMc03070: SMc03070 - glucose-6-phosphate 1-dehydrogenase, at 769,253 to 770,728
SMc03070
SMc00761: SMc00761 - oxidoreductase, at 770,925 to 772,211
SMc00761
SMc00762: SMc00762 - glutamine synthetase, at 772,228 to 773,664
SMc00762
Position (kb) 770
771
772
773 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 770.002 kb on + strand, within SMc03070 at 770.046 kb on + strand, within SMc03070 at 770.130 kb on + strand, within SMc03070 at 770.131 kb on - strand, within SMc03070 at 770.188 kb on - strand, within SMc03070 at 770.312 kb on - strand, within SMc03070 at 770.373 kb on + strand, within SMc03070 at 770.374 kb on - strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.692 kb on - strand at 770.841 kb on + strand at 770.841 kb on + strand at 770.842 kb on - strand at 770.869 kb on + strand at 770.870 kb on - strand at 770.948 kb on - strand at 771.067 kb on + strand, within SMc00761 at 771.067 kb on + strand, within SMc00761 at 771.229 kb on + strand, within SMc00761 at 771.252 kb on + strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.340 kb on + strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.479 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.788 kb on - strand, within SMc00761 at 771.880 kb on + strand, within SMc00761 at 771.880 kb on + strand, within SMc00761 at 771.880 kb on + strand, within SMc00761 at 771.880 kb on + strand, within SMc00761 at 771.881 kb on - strand, within SMc00761 at 772.313 kb on + strand at 772.313 kb on + strand at 772.506 kb on - strand, within SMc00762 at 772.661 kb on + strand, within SMc00762 at 772.662 kb on - strand, within SMc00762 at 772.694 kb on + strand, within SMc00762 at 772.694 kb on + strand, within SMc00762 at 772.711 kb on + strand, within SMc00762 at 772.712 kb on - strand, within SMc00762 at 772.800 kb on + strand, within SMc00762 at 772.800 kb on + strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.801 kb on - strand, within SMc00762 at 772.853 kb on + strand, within SMc00762 at 772.853 kb on + strand, within SMc00762 at 773.018 kb on + strand, within SMc00762 at 773.018 kb on + strand, within SMc00762 at 773.019 kb on - strand, within SMc00762 at 773.156 kb on - strand, within SMc00762
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 770,002 + SMc03070 0.51 +1.1 770,046 + SMc03070 0.54 +0.1 770,130 + SMc03070 0.59 +0.5 770,131 - SMc03070 0.59 -2.5 770,188 - SMc03070 0.63 -2.6 770,312 - SMc03070 0.72 -0.9 770,373 + SMc03070 0.76 +2.6 770,374 - SMc03070 0.76 -2.6 770,460 + SMc03070 0.82 -0.2 770,460 + SMc03070 0.82 -2.6 770,461 - SMc03070 0.82 -0.5 770,461 - SMc03070 0.82 -1.6 770,461 - SMc03070 0.82 -3.9 770,692 - +2.9 770,841 + +0.4 770,841 + -2.4 770,842 - +0.2 770,869 + +1.0 770,870 - -0.5 770,948 - +1.0 771,067 + SMc00761 0.11 +2.3 771,067 + SMc00761 0.11 +1.0 771,229 + SMc00761 0.24 +0.7 771,252 + SMc00761 0.25 +2.8 771,290 - SMc00761 0.28 -0.3 771,290 - SMc00761 0.28 +0.6 771,340 + SMc00761 0.32 +0.9 771,341 - SMc00761 0.32 +0.3 771,341 - SMc00761 0.32 +1.3 771,479 + SMc00761 0.43 +1.4 771,481 + SMc00761 0.43 -0.1 771,481 + SMc00761 0.43 +0.5 771,482 - SMc00761 0.43 +1.5 771,482 - SMc00761 0.43 +1.0 771,482 - SMc00761 0.43 +1.6 771,482 - SMc00761 0.43 +1.1 771,788 - SMc00761 0.67 +1.3 771,880 + SMc00761 0.74 +1.7 771,880 + SMc00761 0.74 +0.3 771,880 + SMc00761 0.74 +0.5 771,880 + SMc00761 0.74 +0.1 771,881 - SMc00761 0.74 +1.6 772,313 + -2.0 772,313 + +2.7 772,506 - SMc00762 0.19 -1.0 772,661 + SMc00762 0.30 -0.5 772,662 - SMc00762 0.30 -0.8 772,694 + SMc00762 0.32 -0.6 772,694 + SMc00762 0.32 +0.8 772,711 + SMc00762 0.34 -4.1 772,712 - SMc00762 0.34 +1.7 772,800 + SMc00762 0.40 +1.3 772,800 + SMc00762 0.40 -0.5 772,801 - SMc00762 0.40 -1.0 772,801 - SMc00762 0.40 -0.4 772,801 - SMc00762 0.40 -1.3 772,853 + SMc00762 0.43 -0.8 772,853 + SMc00762 0.43 +1.4 773,018 + SMc00762 0.55 +0.7 773,018 + SMc00762 0.55 -0.6 773,019 - SMc00762 0.55 -1.8 773,156 - SMc00762 0.65 +0.3
Or see this region's nucleotide sequence