Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00372 and SMc00373 are separated by 140 nucleotides SMc00373 and SMc00374 are separated by 86 nucleotides
SMc00372: SMc00372 - short chain dehydrogenase, at 326,479 to 327,249
SMc00372
SMc00373: SMc00373 - hypothetical protein, at 327,390 to 328,064
SMc00373
SMc00374: SMc00374 - oxidoreductase transmembrane protein, at 328,151 to 329,101
SMc00374
Position (kb) 327
328
329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 326.497 kb on - strand at 326.584 kb on - strand, within SMc00372 at 326.793 kb on - strand, within SMc00372 at 326.818 kb on - strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.169 kb on + strand, within SMc00372 at 327.189 kb on + strand at 327.189 kb on + strand at 327.190 kb on - strand at 327.273 kb on + strand at 327.355 kb on + strand at 327.355 kb on + strand at 327.356 kb on - strand at 327.356 kb on - strand at 327.356 kb on - strand at 327.436 kb on + strand at 327.437 kb on - strand at 327.437 kb on - strand at 327.437 kb on - strand at 327.695 kb on + strand, within SMc00373 at 327.696 kb on - strand, within SMc00373 at 327.828 kb on + strand, within SMc00373 at 327.909 kb on + strand, within SMc00373 at 327.910 kb on - strand, within SMc00373 at 327.979 kb on - strand, within SMc00373 at 328.063 kb on - strand at 328.063 kb on - strand at 328.063 kb on - strand at 328.108 kb on + strand at 328.178 kb on + strand at 328.467 kb on + strand, within SMc00374 at 328.468 kb on - strand, within SMc00374 at 328.521 kb on + strand, within SMc00374 at 328.521 kb on + strand, within SMc00374 at 328.522 kb on - strand, within SMc00374 at 328.522 kb on - strand, within SMc00374 at 328.546 kb on - strand, within SMc00374 at 328.672 kb on + strand, within SMc00374 at 328.672 kb on + strand, within SMc00374 at 328.673 kb on - strand, within SMc00374 at 328.698 kb on + strand, within SMc00374 at 328.698 kb on + strand, within SMc00374 at 328.698 kb on + strand, within SMc00374 at 328.699 kb on - strand, within SMc00374 at 328.703 kb on + strand, within SMc00374 at 328.703 kb on + strand, within SMc00374 at 328.703 kb on + strand, within SMc00374 at 328.703 kb on + strand, within SMc00374 at 328.703 kb on + strand, within SMc00374 at 328.704 kb on - strand, within SMc00374 at 328.704 kb on - strand, within SMc00374 at 328.731 kb on + strand, within SMc00374 at 328.731 kb on + strand, within SMc00374 at 328.731 kb on + strand, within SMc00374 at 328.732 kb on - strand, within SMc00374 at 328.732 kb on - strand, within SMc00374 at 328.732 kb on - strand, within SMc00374 at 328.741 kb on + strand, within SMc00374 at 328.742 kb on - strand, within SMc00374 at 328.743 kb on + strand, within SMc00374 at 328.743 kb on + strand, within SMc00374 at 328.744 kb on - strand, within SMc00374 at 328.891 kb on + strand, within SMc00374 at 328.891 kb on + strand, within SMc00374 at 328.892 kb on - strand, within SMc00374 at 328.944 kb on + strand, within SMc00374 at 328.945 kb on - strand, within SMc00374 at 328.945 kb on - strand, within SMc00374
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 326,497 - -0.8 326,584 - SMc00372 0.14 +0.4 326,793 - SMc00372 0.41 +1.0 326,818 - SMc00372 0.44 -0.4 327,169 + SMc00372 0.89 -2.2 327,169 + SMc00372 0.89 -0.1 327,189 + -3.8 327,189 + -2.4 327,190 - -1.9 327,273 + -3.1 327,355 + +0.5 327,355 + +1.6 327,356 - -0.6 327,356 - -0.4 327,356 - -1.1 327,436 + -3.1 327,437 - +0.1 327,437 - -3.0 327,437 - +1.5 327,695 + SMc00373 0.45 +0.7 327,696 - SMc00373 0.45 -2.2 327,828 + SMc00373 0.65 -0.1 327,909 + SMc00373 0.77 +0.8 327,910 - SMc00373 0.77 -2.2 327,979 - SMc00373 0.87 -1.0 328,063 - +1.9 328,063 - +1.2 328,063 - -0.3 328,108 + -0.6 328,178 + -0.8 328,467 + SMc00374 0.33 -0.5 328,468 - SMc00374 0.33 +1.2 328,521 + SMc00374 0.39 +0.5 328,521 + SMc00374 0.39 +0.3 328,522 - SMc00374 0.39 +1.6 328,522 - SMc00374 0.39 -0.4 328,546 - SMc00374 0.42 -0.5 328,672 + SMc00374 0.55 -2.7 328,672 + SMc00374 0.55 +0.7 328,673 - SMc00374 0.55 -1.1 328,698 + SMc00374 0.58 -0.5 328,698 + SMc00374 0.58 +4.0 328,698 + SMc00374 0.58 -0.1 328,699 - SMc00374 0.58 +0.6 328,703 + SMc00374 0.58 -0.5 328,703 + SMc00374 0.58 -1.7 328,703 + SMc00374 0.58 -0.4 328,703 + SMc00374 0.58 +0.4 328,703 + SMc00374 0.58 +2.0 328,704 - SMc00374 0.58 -1.6 328,704 - SMc00374 0.58 +0.3 328,731 + SMc00374 0.61 +0.6 328,731 + SMc00374 0.61 -1.1 328,731 + SMc00374 0.61 -4.4 328,732 - SMc00374 0.61 +0.0 328,732 - SMc00374 0.61 +2.4 328,732 - SMc00374 0.61 -2.5 328,741 + SMc00374 0.62 -0.2 328,742 - SMc00374 0.62 -0.4 328,743 + SMc00374 0.62 -1.2 328,743 + SMc00374 0.62 -0.5 328,744 - SMc00374 0.62 -1.8 328,891 + SMc00374 0.78 +1.8 328,891 + SMc00374 0.78 -1.5 328,892 - SMc00374 0.78 -0.3 328,944 + SMc00374 0.83 +0.2 328,945 - SMc00374 0.83 -0.4 328,945 - SMc00374 0.83 +0.4
Or see this region's nucleotide sequence