Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00073 and SMc00019 are separated by 92 nucleotides SMc00019 and SMc00074 are separated by 157 nucleotides SMc00074 and SMc00075 overlap by 1 nucleotides SMc00075 and SMc00451 are separated by 271 nucleotides
SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068
SMc00073
SMc00019: SMc00019 - hypothetical protein, at 1,003,161 to 1,003,766
SMc00019
SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836
SMc00074
SMc00075: SMc00075 - ribosomal-protein-alanine acetyltransferase, at 1,006,836 to 1,007,447
SMc00075
SMc00451: SMc00451 - processing protease, at 1,007,719 to 1,009,017
SMc00451
Position (kb)
1003
1004
1005
1006
1007 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1003.025 kb on - strand at 1003.041 kb on - strand at 1003.041 kb on - strand at 1003.147 kb on - strand at 1003.152 kb on - strand at 1003.152 kb on - strand at 1003.181 kb on + strand at 1003.182 kb on - strand at 1003.590 kb on + strand, within SMc00019 at 1003.699 kb on - strand, within SMc00019 at 1006.925 kb on - strand, within SMc00075 at 1006.925 kb on - strand, within SMc00075 at 1006.937 kb on - strand, within SMc00075 at 1007.042 kb on - strand, within SMc00075 at 1007.069 kb on - strand, within SMc00075 at 1007.069 kb on - strand, within SMc00075 at 1007.073 kb on - strand, within SMc00075 at 1007.381 kb on - strand, within SMc00075 at 1007.450 kb on - strand at 1007.450 kb on - strand at 1007.450 kb on - strand at 1007.669 kb on - strand at 1007.737 kb on + strand at 1007.770 kb on + strand at 1007.771 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,003,025 - -0.0 1,003,041 - +1.5 1,003,041 - +1.5 1,003,147 - -2.0 1,003,152 - -0.5 1,003,152 - -4.5 1,003,181 + +1.1 1,003,182 - +1.4 1,003,590 + SMc00019 0.71 +0.4 1,003,699 - SMc00019 0.89 +0.0 1,006,925 - SMc00075 0.15 +1.2 1,006,925 - SMc00075 0.15 -0.8 1,006,937 - SMc00075 0.17 +0.6 1,007,042 - SMc00075 0.34 +1.3 1,007,069 - SMc00075 0.38 +1.3 1,007,069 - SMc00075 0.38 +0.7 1,007,073 - SMc00075 0.39 -1.4 1,007,381 - SMc00075 0.89 -0.0 1,007,450 - -1.9 1,007,450 - -3.3 1,007,450 - +0.3 1,007,669 - -0.0 1,007,737 + -3.7 1,007,770 + +0.5 1,007,771 - +1.1
Or see this region's nucleotide sequence