Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1459 and SMa1461 overlap by 4 nucleotides SMa1461 and SMa1462 are separated by 126 nucleotides
SMa1459: SMa1459 - Dehydrogenase, malate/L-lactate family, at 803,336 to 804,340
SMa1459
SMa1461: SMa1461 - muconate cycloisomerase, at 804,337 to 805,461
SMa1461
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 803.338 kb on - strand at 803.645 kb on - strand, within SMa1459 at 803.846 kb on + strand, within SMa1459 at 803.939 kb on - strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.532 kb on - strand, within SMa1461 at 804.691 kb on + strand, within SMa1461 at 804.821 kb on + strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 805.046 kb on + strand, within SMa1461 at 805.047 kb on - strand, within SMa1461 at 805.052 kb on + strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.177 kb on - strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.197 kb on - strand, within SMa1461 at 805.392 kb on - strand at 805.501 kb on + strand at 805.502 kb on - strand at 805.504 kb on - strand at 805.590 kb on - strand at 805.610 kb on + strand at 805.772 kb on + strand, within SMa1462 at 805.772 kb on + strand, within SMa1462 at 805.886 kb on + strand, within SMa1462 at 805.887 kb on - strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.073 kb on + strand, within SMa1462 at 806.090 kb on + strand, within SMa1462 at 806.091 kb on - strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.101 kb on - strand, within SMa1462 at 806.229 kb on + strand, within SMa1462 at 806.230 kb on - strand, within SMa1462
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 803,338 - -0.6 803,645 - SMa1459 0.31 -0.7 803,846 + SMa1459 0.51 -0.2 803,939 - SMa1459 0.60 -0.6 803,989 + SMa1459 0.65 +0.6 803,989 + SMa1459 0.65 -1.7 803,991 + SMa1459 0.65 +0.0 803,991 + SMa1459 0.65 -1.1 803,992 - SMa1459 0.65 -0.3 803,992 - SMa1459 0.65 +1.2 803,992 - SMa1459 0.65 -2.9 804,190 - SMa1459 0.85 +0.3 804,190 - SMa1459 0.85 -2.5 804,192 + SMa1459 0.85 +0.7 804,192 + SMa1459 0.85 -0.4 804,532 - SMa1461 0.17 +0.1 804,691 + SMa1461 0.31 -0.6 804,821 + SMa1461 0.43 +1.5 804,969 - SMa1461 0.56 +0.6 804,969 - SMa1461 0.56 -2.5 805,046 + SMa1461 0.63 +0.3 805,047 - SMa1461 0.63 +0.1 805,052 + SMa1461 0.64 +1.0 805,132 - SMa1461 0.71 +1.6 805,132 - SMa1461 0.71 +1.0 805,177 - SMa1461 0.75 +1.2 805,196 + SMa1461 0.76 +0.5 805,196 + SMa1461 0.76 +0.2 805,197 - SMa1461 0.76 -0.7 805,392 - +0.6 805,501 + +1.0 805,502 - -0.4 805,504 - -0.9 805,590 - -1.2 805,610 + +0.0 805,772 + SMa1462 0.21 -2.3 805,772 + SMa1462 0.21 +0.5 805,886 + SMa1462 0.33 +2.4 805,887 - SMa1462 0.34 +1.1 806,005 + SMa1462 0.47 +2.7 806,005 + SMa1462 0.47 -0.1 806,005 + SMa1462 0.47 +1.9 806,005 + SMa1462 0.47 +1.7 806,005 + SMa1462 0.47 -0.9 806,006 - SMa1462 0.47 +0.6 806,006 - SMa1462 0.47 -0.4 806,006 - SMa1462 0.47 -0.7 806,006 - SMa1462 0.47 -0.2 806,006 - SMa1462 0.47 -2.9 806,007 + SMa1462 0.47 -0.9 806,007 + SMa1462 0.47 +0.9 806,024 + SMa1462 0.49 +0.4 806,024 + SMa1462 0.49 -2.1 806,073 + SMa1462 0.54 -1.0 806,090 + SMa1462 0.56 -0.0 806,091 - SMa1462 0.56 -1.3 806,096 + SMa1462 0.57 -0.7 806,096 + SMa1462 0.57 +0.1 806,096 + SMa1462 0.57 -0.2 806,096 + SMa1462 0.57 -0.9 806,096 + SMa1462 0.57 -0.3 806,096 + SMa1462 0.57 +2.9 806,096 + SMa1462 0.57 +1.9 806,097 - SMa1462 0.57 -0.9 806,097 - SMa1462 0.57 +0.5 806,097 - SMa1462 0.57 -0.2 806,097 - SMa1462 0.57 +0.2 806,101 - SMa1462 0.58 +2.4 806,229 + SMa1462 0.72 +1.7 806,230 - SMa1462 0.72 +0.7
Or see this region's nucleotide sequence