Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1414 and SMa1415 overlap by 1 nucleotides SMa1415 and SMa1417 are separated by 162 nucleotides
SMa1414: SMa1414 - Dehydrogenase, FAD-dependent, at 777,621 to 779,216
SMa1414
SMa1415: SMa1415 - aldehyde dehydrogenase, at 779,216 to 780,712
SMa1415
SMa1417: SMa1417 - Dehydrogenase, Zn-dependent, at 780,875 to 781,900
SMa1417
Position (kb) 779
780
781 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.285 kb on + strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.371 kb on - strand, within SMa1414 at 778.442 kb on + strand, within SMa1414 at 778.520 kb on - strand, within SMa1414 at 778.618 kb on + strand, within SMa1414 at 778.619 kb on - strand, within SMa1414 at 778.666 kb on + strand, within SMa1414 at 778.710 kb on - strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.829 kb on + strand, within SMa1414 at 778.830 kb on - strand, within SMa1414 at 778.852 kb on + strand, within SMa1414 at 778.853 kb on - strand, within SMa1414 at 778.909 kb on + strand, within SMa1414 at 778.910 kb on - strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.931 kb on + strand, within SMa1414 at 778.933 kb on + strand, within SMa1414 at 779.259 kb on + strand at 779.272 kb on + strand at 779.272 kb on + strand at 779.273 kb on - strand at 779.273 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.275 kb on - strand at 779.290 kb on - strand at 779.365 kb on + strand at 779.365 kb on + strand at 779.366 kb on - strand, within SMa1415 at 779.423 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.590 kb on - strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.662 kb on + strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 779.665 kb on - strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.076 kb on + strand, within SMa1415 at 780.077 kb on - strand, within SMa1415 at 780.078 kb on + strand, within SMa1415 at 780.079 kb on - strand, within SMa1415 at 780.212 kb on - strand, within SMa1415 at 780.341 kb on + strand, within SMa1415 at 780.730 kb on + strand at 780.877 kb on - strand at 780.961 kb on - strand at 781.077 kb on - strand, within SMa1417 at 781.088 kb on + strand, within SMa1417 at 781.121 kb on - strand, within SMa1417 at 781.271 kb on + strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.515 kb on - strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.542 kb on + strand, within SMa1417 at 781.543 kb on - strand, within SMa1417
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 778,285 + SMa1414 0.42 +0.1 778,285 + SMa1414 0.42 -0.8 778,285 + SMa1414 0.42 -0.2 778,371 - SMa1414 0.47 +0.1 778,371 - SMa1414 0.47 +0.6 778,442 + SMa1414 0.51 -1.1 778,520 - SMa1414 0.56 -0.6 778,618 + SMa1414 0.62 -0.1 778,619 - SMa1414 0.63 -1.0 778,666 + SMa1414 0.65 +1.5 778,710 - SMa1414 0.68 +0.4 778,829 + SMa1414 0.76 -0.3 778,829 + SMa1414 0.76 +0.4 778,829 + SMa1414 0.76 +0.8 778,830 - SMa1414 0.76 +0.4 778,852 + SMa1414 0.77 +0.4 778,853 - SMa1414 0.77 -4.2 778,909 + SMa1414 0.81 +0.8 778,910 - SMa1414 0.81 +0.7 778,931 + SMa1414 0.82 -0.9 778,931 + SMa1414 0.82 +1.4 778,933 + SMa1414 0.82 -0.2 779,259 + -0.4 779,272 + +1.6 779,272 + +0.8 779,273 - -1.8 779,273 - -1.1 779,275 - -0.4 779,275 - -1.0 779,275 - -2.1 779,290 - -0.5 779,365 + -0.5 779,365 + -1.4 779,366 - SMa1415 0.10 -0.5 779,423 - SMa1415 0.14 +0.1 779,590 - SMa1415 0.25 +0.9 779,590 - SMa1415 0.25 +0.7 779,662 + SMa1415 0.30 -2.2 779,662 + SMa1415 0.30 -0.9 779,665 - SMa1415 0.30 +2.0 779,665 - SMa1415 0.30 +3.5 779,665 - SMa1415 0.30 -2.9 780,076 + SMa1415 0.57 +0.1 780,076 + SMa1415 0.57 -1.0 780,077 - SMa1415 0.58 +0.7 780,078 + SMa1415 0.58 +0.5 780,079 - SMa1415 0.58 +0.1 780,212 - SMa1415 0.67 +1.2 780,341 + SMa1415 0.75 -3.5 780,730 + -1.3 780,877 - +0.3 780,961 - -0.8 781,077 - SMa1417 0.20 -2.8 781,088 + SMa1417 0.21 -1.2 781,121 - SMa1417 0.24 -3.4 781,271 + SMa1417 0.39 +1.1 781,515 - SMa1417 0.62 -0.1 781,515 - SMa1417 0.62 -0.6 781,542 + SMa1417 0.65 +2.9 781,542 + SMa1417 0.65 -0.6 781,543 - SMa1417 0.65 +0.3
Or see this region's nucleotide sequence