Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1341 and SMa1344 are separated by 196 nucleotides SMa1344 and SMa1345 overlap by 1 nucleotides
SMa1341: SMa1341 - ABC transporter permease, at 733,694 to 734,653
SMa1341
SMa1344: SMa1344 - ABC transporter ATP-binding protein, at 734,850 to 735,959
SMa1344
SMa1345: SMa1345 - ABC transporter ATP-binding protein, at 735,959 to 737,035
SMa1345
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 733.931 kb on + strand, within SMa1341 at 734.065 kb on + strand, within SMa1341 at 734.102 kb on + strand, within SMa1341 at 734.157 kb on + strand, within SMa1341 at 734.197 kb on + strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.249 kb on - strand, within SMa1341 at 734.250 kb on + strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.274 kb on + strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.327 kb on + strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.437 kb on + strand, within SMa1341 at 734.438 kb on - strand, within SMa1341 at 734.677 kb on + strand at 734.678 kb on - strand at 734.708 kb on + strand at 734.708 kb on + strand at 734.708 kb on + strand at 734.758 kb on + strand at 734.759 kb on - strand at 734.777 kb on + strand at 734.778 kb on - strand at 734.778 kb on - strand at 734.866 kb on + strand at 734.867 kb on - strand at 734.987 kb on - strand, within SMa1344 at 735.035 kb on - strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.134 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.712 kb on + strand, within SMa1344 at 735.713 kb on - strand, within SMa1344 at 735.777 kb on - strand, within SMa1344 at 735.809 kb on - strand, within SMa1344 at 735.895 kb on + strand at 735.896 kb on - strand at 735.896 kb on - strand at 735.896 kb on - strand at 736.208 kb on + strand, within SMa1345 at 736.227 kb on - strand, within SMa1345 at 736.228 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.848 kb on + strand, within SMa1345 at 736.849 kb on - strand, within SMa1345 at 736.894 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.901 kb on - strand, within SMa1345
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 733,931 + SMa1341 0.25 +1.2 734,065 + SMa1341 0.39 -0.2 734,102 + SMa1341 0.42 -3.2 734,157 + SMa1341 0.48 -3.1 734,197 + SMa1341 0.52 +0.3 734,198 - SMa1341 0.53 -0.4 734,198 - SMa1341 0.53 +0.8 734,248 + SMa1341 0.58 +0.4 734,248 + SMa1341 0.58 +1.1 734,248 + SMa1341 0.58 -0.6 734,249 - SMa1341 0.58 +2.5 734,250 + SMa1341 0.58 +1.5 734,259 - SMa1341 0.59 -2.1 734,259 - SMa1341 0.59 +0.5 734,274 + SMa1341 0.60 -2.6 734,275 - SMa1341 0.61 +0.4 734,275 - SMa1341 0.61 -0.5 734,327 + SMa1341 0.66 +1.1 734,328 - SMa1341 0.66 +1.9 734,328 - SMa1341 0.66 +0.8 734,437 + SMa1341 0.77 -1.1 734,438 - SMa1341 0.78 +0.5 734,677 + -1.5 734,678 - -0.2 734,708 + +0.3 734,708 + +0.7 734,708 + -3.1 734,758 + -0.5 734,759 - -1.2 734,777 + +0.1 734,778 - -1.2 734,778 - +2.2 734,866 + -1.6 734,867 - -1.3 734,987 - SMa1344 0.12 -0.1 735,035 - SMa1344 0.17 +0.4 735,058 + SMa1344 0.19 -2.5 735,058 + SMa1344 0.19 +1.3 735,058 + SMa1344 0.19 +0.7 735,088 + SMa1344 0.21 +0.1 735,088 + SMa1344 0.21 +0.6 735,134 + SMa1344 0.26 -0.1 735,414 + SMa1344 0.51 -0.9 735,414 + SMa1344 0.51 -0.2 735,414 + SMa1344 0.51 -2.8 735,414 + SMa1344 0.51 -1.8 735,415 - SMa1344 0.51 +1.0 735,415 - SMa1344 0.51 +0.7 735,415 - SMa1344 0.51 +0.9 735,419 - SMa1344 0.51 -0.1 735,419 - SMa1344 0.51 -1.2 735,419 - SMa1344 0.51 -1.4 735,712 + SMa1344 0.78 -2.6 735,713 - SMa1344 0.78 +3.0 735,777 - SMa1344 0.84 +2.6 735,809 - SMa1344 0.86 +0.1 735,895 + +0.4 735,896 - -0.6 735,896 - -0.1 735,896 - -1.4 736,208 + SMa1345 0.23 -0.4 736,227 - SMa1345 0.25 -1.4 736,228 + SMa1345 0.25 +0.3 736,628 + SMa1345 0.62 +1.8 736,628 + SMa1345 0.62 -0.4 736,628 + SMa1345 0.62 -2.6 736,628 + SMa1345 0.62 -2.6 736,628 + SMa1345 0.62 +1.4 736,629 - SMa1345 0.62 -0.7 736,629 - SMa1345 0.62 -0.3 736,629 - SMa1345 0.62 +1.3 736,848 + SMa1345 0.83 -1.2 736,849 - SMa1345 0.83 -0.9 736,894 + SMa1345 0.87 -2.5 736,900 + SMa1345 0.87 -0.9 736,900 + SMa1345 0.87 -0.6 736,901 - SMa1345 0.87 +0.5
Or see this region's nucleotide sequence