Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0955 and SMa0956 are separated by 107 nucleotides SMa0956 and SMa0958 overlap by 4 nucleotides
SMa0955: SMa0955 - GntR family transcriptional regulator, at 534,018 to 534,710
SMa0955
SMa0956: SMa0956 - AtrB glutamate-1-semialdehyde 2,1-aminomutase, at 534,818 to 536,179
SMa0956
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
Position (kb) 534
535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.924 kb on - strand at 534.231 kb on + strand, within SMa0955 at 534.567 kb on + strand, within SMa0955 at 534.568 kb on - strand, within SMa0955 at 534.709 kb on - strand at 534.709 kb on - strand at 534.817 kb on + strand at 534.818 kb on - strand at 534.879 kb on + strand at 534.879 kb on + strand at 534.880 kb on - strand at 534.900 kb on + strand at 534.901 kb on - strand at 534.904 kb on + strand at 534.953 kb on + strand at 534.977 kb on + strand, within SMa0956 at 535.092 kb on + strand, within SMa0956 at 535.254 kb on + strand, within SMa0956 at 535.255 kb on - strand, within SMa0956 at 535.274 kb on + strand, within SMa0956 at 535.324 kb on + strand, within SMa0956 at 535.342 kb on + strand, within SMa0956 at 535.343 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.555 kb on + strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.559 kb on + strand, within SMa0956 at 535.607 kb on + strand, within SMa0956 at 535.668 kb on + strand, within SMa0956 at 535.695 kb on + strand, within SMa0956 at 535.713 kb on + strand, within SMa0956 at 535.714 kb on - strand, within SMa0956 at 536.056 kb on - strand at 536.056 kb on - strand at 536.060 kb on + strand at 536.114 kb on - strand at 536.214 kb on + strand at 536.216 kb on + strand at 536.357 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.600 kb on - strand, within SMa0958 at 536.720 kb on + strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 537.133 kb on + strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 533,924 - -0.1 534,231 + SMa0955 0.31 -2.4 534,567 + SMa0955 0.79 +2.3 534,568 - SMa0955 0.79 +0.3 534,709 - +0.2 534,709 - +1.5 534,817 + +0.5 534,818 - +1.2 534,879 + -0.0 534,879 + -2.0 534,880 - -2.5 534,900 + +0.8 534,901 - -2.8 534,904 + -0.9 534,953 + +2.5 534,977 + SMa0956 0.12 -0.8 535,092 + SMa0956 0.20 +0.8 535,254 + SMa0956 0.32 -0.5 535,255 - SMa0956 0.32 -2.7 535,274 + SMa0956 0.33 -2.7 535,324 + SMa0956 0.37 +0.4 535,342 + SMa0956 0.38 -2.2 535,343 - SMa0956 0.39 +0.3 535,365 - SMa0956 0.40 -0.3 535,365 - SMa0956 0.40 -1.0 535,365 - SMa0956 0.40 -3.2 535,365 - SMa0956 0.40 -0.3 535,555 + SMa0956 0.54 -0.7 535,556 - SMa0956 0.54 -0.5 535,556 - SMa0956 0.54 -1.1 535,556 - SMa0956 0.54 +1.3 535,556 - SMa0956 0.54 +0.0 535,559 + SMa0956 0.54 -0.2 535,607 + SMa0956 0.58 -1.1 535,668 + SMa0956 0.62 -2.5 535,695 + SMa0956 0.64 -0.3 535,713 + SMa0956 0.66 +1.9 535,714 - SMa0956 0.66 -2.2 536,056 - +1.1 536,056 - +0.4 536,060 + +0.8 536,114 - -1.0 536,214 + +1.0 536,216 + -1.4 536,357 + SMa0958 0.11 -1.1 536,599 + SMa0958 0.25 -0.8 536,599 + SMa0958 0.25 -0.7 536,599 + SMa0958 0.25 -2.6 536,600 - SMa0958 0.25 +0.4 536,720 + SMa0958 0.32 +0.2 536,927 - SMa0958 0.44 -0.7 536,927 - SMa0958 0.44 -0.9 536,927 - SMa0958 0.44 -0.4 536,992 + SMa0958 0.48 -0.1 536,992 + SMa0958 0.48 -0.3 536,993 - SMa0958 0.48 -0.1 536,993 - SMa0958 0.48 -0.5 537,133 + SMa0958 0.56 -3.6 537,134 - SMa0958 0.56 +0.7 537,134 - SMa0958 0.56 +0.6 537,134 - SMa0958 0.56 +1.6
Or see this region's nucleotide sequence