Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0448 and SMa0450 are separated by 549 nucleotides
SMa0448: SMa0448 - hypothetical protein, at 240,025 to 240,435
SMa0448
SMa0450: SMa0450 - hypothetical protein, at 240,985 to 241,272
SMa0450
Position (kb) 240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 240.056 kb on + strand at 240.057 kb on - strand at 240.057 kb on - strand at 240.080 kb on + strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.081 kb on - strand, within SMa0448 at 240.172 kb on + strand, within SMa0448 at 240.407 kb on - strand at 240.458 kb on + strand at 240.459 kb on - strand at 240.525 kb on + strand at 240.567 kb on - strand at 240.567 kb on - strand at 240.659 kb on + strand at 240.660 kb on - strand at 240.660 kb on - strand at 240.728 kb on - strand at 240.778 kb on - strand at 240.867 kb on + strand at 241.054 kb on + strand, within SMa0450 at 241.058 kb on + strand, within SMa0450 at 241.059 kb on - strand, within SMa0450 at 241.270 kb on + strand at 241.325 kb on - strand at 241.325 kb on - strand at 241.395 kb on + strand at 241.395 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.420 kb on + strand at 241.422 kb on + strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.423 kb on - strand at 241.503 kb on + strand at 241.503 kb on + strand at 241.504 kb on - strand at 241.546 kb on - strand at 241.548 kb on + strand at 241.548 kb on + strand at 241.549 kb on - strand at 241.549 kb on - strand at 241.549 kb on - strand at 241.642 kb on - strand at 241.744 kb on + strand at 241.910 kb on + strand at 242.109 kb on - strand at 242.111 kb on - strand at 242.175 kb on + strand at 242.175 kb on + strand at 242.176 kb on - strand at 242.182 kb on + strand at 242.271 kb on - strand at 242.271 kb on - strand at 242.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 240,056 + -1.5 240,057 - +0.6 240,057 - +2.0 240,080 + SMa0448 0.13 -2.8 240,081 - SMa0448 0.14 -0.0 240,081 - SMa0448 0.14 +1.1 240,172 + SMa0448 0.36 -0.5 240,407 - -1.5 240,458 + +2.2 240,459 - -2.9 240,525 + -1.0 240,567 - +0.5 240,567 - +1.1 240,659 + -1.7 240,660 - -1.7 240,660 - +1.6 240,728 - -1.4 240,778 - +2.2 240,867 + +1.1 241,054 + SMa0450 0.24 +1.1 241,058 + SMa0450 0.25 +0.1 241,059 - SMa0450 0.26 -1.9 241,270 + +0.6 241,325 - -0.9 241,325 - -2.0 241,395 + +1.0 241,395 + +3.1 241,420 + +0.3 241,420 + +0.8 241,420 + +0.6 241,422 + -0.1 241,423 - -1.1 241,423 - -3.5 241,423 - +1.1 241,423 - -2.0 241,503 + -0.1 241,503 + -1.1 241,504 - -0.9 241,546 - +0.9 241,548 + +1.6 241,548 + +0.9 241,549 - +0.3 241,549 - +2.0 241,549 - -1.9 241,642 - -0.2 241,744 + -1.0 241,910 + +0.6 242,109 - +0.1 242,111 - -0.4 242,175 + +0.9 242,175 + -1.3 242,176 - -2.2 242,182 + -1.9 242,271 - -0.1 242,271 - +0.4 242,271 - -4.4
Or see this region's nucleotide sequence