Strain Fitness in Sinorhizobium meliloti 1021 around SMa0391

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0389 and SMa0391 are separated by 305 nucleotidesSMa0391 and SMa0392 are separated by 33 nucleotides SMa0389: SMa0389 - short chain alcohol dehydrogenase-related dehydrogenase, at 210,263 to 211,030 SMa0389 SMa0391: SMa0391 - ABC transporter ATP-binding protein, at 211,336 to 212,469 SMa0391 SMa0392: SMa0392 - ABC transporter substrate-binding protein, at 212,503 to 213,618 SMa0392 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 210.338 kb on - strandat 210.394 kb on - strand, within SMa0389at 210.394 kb on - strand, within SMa0389at 210.580 kb on - strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.863 kb on + strandat 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.977 kb on + strandat 210.980 kb on - strandat 210.980 kb on - strandat 210.994 kb on + strandat 210.994 kb on + strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 211.014 kb on - strandat 211.222 kb on + strandat 211.223 kb on - strandat 211.225 kb on + strandat 211.226 kb on - strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.232 kb on + strandat 211.233 kb on - strandat 211.233 kb on - strandat 211.235 kb on - strandat 211.249 kb on - strandat 211.288 kb on + strandat 211.335 kb on + strandat 211.335 kb on + strandat 211.336 kb on - strandat 211.614 kb on + strand, within SMa0391at 211.615 kb on - strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 211.729 kb on + strand, within SMa0391at 212.045 kb on - strand, within SMa0391at 212.121 kb on + strand, within SMa0391at 212.156 kb on + strand, within SMa0391at 212.157 kb on - strand, within SMa0391at 212.234 kb on + strand, within SMa0391at 212.329 kb on + strand, within SMa0391at 212.449 kb on - strandat 212.501 kb on + strandat 212.502 kb on - strandat 212.709 kb on + strand, within SMa0392at 212.709 kb on + strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.969 kb on - strand, within SMa0392at 213.064 kb on + strand, within SMa0392at 213.064 kb on + strandat 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.380 kb on - strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.396 kb on + strand, within SMa0392at 213.396 kb on + strand, within SMa0392

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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210,338 - +0.2
210,394 - SMa0389 0.17 +2.0
210,394 - SMa0389 0.17 +0.0
210,580 - SMa0389 0.41 -0.4
210,598 + SMa0389 0.44 +2.0
210,598 + SMa0389 0.44 +0.4
210,601 + SMa0389 0.44 -0.3
210,601 + SMa0389 0.44 +0.4
210,601 + SMa0389 0.44 -1.7
210,601 + SMa0389 0.44 +0.7
210,601 + SMa0389 0.44 +0.2
210,602 - SMa0389 0.44 -0.6
210,602 - SMa0389 0.44 -0.0
210,602 - SMa0389 0.44 -2.1
210,710 + SMa0389 0.58 -0.0
210,710 + SMa0389 0.58 -3.1
210,710 + SMa0389 0.58 +1.6
210,710 + SMa0389 0.58 -0.2
210,711 - SMa0389 0.58 -0.6
210,711 - SMa0389 0.58 -0.6
210,711 - SMa0389 0.58 +2.5
210,863 + +2.0
210,864 - SMa0389 0.78 -0.1
210,864 - SMa0389 0.78 -0.9
210,864 - SMa0389 0.78 +1.1
210,977 + -0.2
210,980 - +0.5
210,980 - +0.4
210,994 + +0.9
210,994 + -0.7
210,995 - -1.0
210,995 - +1.5
210,995 - -2.1
210,995 - -1.0
211,014 - +1.3
211,222 + -1.1
211,223 - -1.7
211,225 + -3.2
211,226 - +0.8
211,232 + -0.2
211,232 + +1.2
211,232 + -0.9
211,233 - -1.2
211,233 - +0.5
211,235 - -1.3
211,249 - -0.8
211,288 + -1.9
211,335 + -0.6
211,335 + -0.3
211,336 - +0.1
211,614 + SMa0391 0.25 -1.6
211,615 - SMa0391 0.25 +0.0
211,729 + SMa0391 0.35 +0.3
211,729 + SMa0391 0.35 -1.0
212,045 - SMa0391 0.63 +0.1
212,121 + SMa0391 0.69 +0.1
212,156 + SMa0391 0.72 -0.7
212,157 - SMa0391 0.72 -0.2
212,234 + SMa0391 0.79 -2.6
212,329 + SMa0391 0.88 -1.4
212,449 - -4.0
212,501 + +0.5
212,502 - -1.7
212,709 + SMa0392 0.18 +0.8
212,709 + SMa0392 0.18 -2.7
212,710 - SMa0392 0.19 +2.6
212,710 - SMa0392 0.19 +1.2
212,710 - SMa0392 0.19 +0.1
212,710 - SMa0392 0.19 +1.5
212,710 - SMa0392 0.19 +0.2
212,956 + SMa0392 0.41 +3.1
212,956 + SMa0392 0.41 -3.3
212,962 + SMa0392 0.41 -0.0
212,962 + SMa0392 0.41 -2.9
212,968 + SMa0392 0.42 +0.3
212,968 + SMa0392 0.42 +1.0
212,969 - SMa0392 0.42 -0.6
213,064 + SMa0392 0.50 -1.4
213,064 + +0.4
213,065 - SMa0392 0.50 -0.4
213,065 - SMa0392 0.50 -0.3
213,065 - SMa0392 0.50 +0.4
213,065 - SMa0392 0.50 +0.7
213,065 - SMa0392 0.50 -1.1
213,065 - SMa0392 0.50 -0.8
213,211 - SMa0392 0.63 -0.6
213,211 - SMa0392 0.63 -0.9
213,379 + SMa0392 0.78 +1.6
213,379 + SMa0392 0.78 -1.2
213,379 + SMa0392 0.78 -2.8
213,380 - SMa0392 0.79 +0.0
213,394 + SMa0392 0.80 +0.7
213,394 + SMa0392 0.80 -1.9
213,394 + SMa0392 0.80 -0.7
213,394 + SMa0392 0.80 +1.1
213,395 - SMa0392 0.80 -0.3
213,395 - SMa0392 0.80 -0.4
213,395 - SMa0392 0.80 +0.1
213,395 - SMa0392 0.80 +0.7
213,396 + SMa0392 0.80 -0.7
213,396 + SMa0392 0.80 +0.4

Or see this region's nucleotide sequence