Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0285 and SMa0286 are separated by 200 nucleotides SMa0286 and SMa0287 are separated by 10 nucleotides SMa0287 and SMa0288 overlap by 4 nucleotides
SMa0285: SMa0285 - hypothetical protein, at 159,165 to 159,389
SMa0285
SMa0286: SMa0286 - hypothetical protein, at 159,590 to 160,051
SMa0286
SMa0287: SMa0287 - hypothetical protein, at 160,062 to 160,508
SMa0287
SMa0288: SMa0288 - hypothetical protein, at 160,505 to 161,341
SMa0288
Position (kb) 160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.072 kb on - strand at 159.135 kb on + strand at 159.135 kb on + strand at 159.136 kb on - strand at 159.136 kb on - strand at 159.136 kb on - strand at 159.416 kb on + strand at 159.416 kb on + strand at 159.416 kb on + strand at 159.417 kb on - strand at 159.417 kb on - strand at 159.515 kb on + strand at 159.515 kb on + strand at 159.516 kb on - strand at 159.528 kb on + strand at 159.529 kb on - strand at 159.529 kb on - strand at 159.591 kb on + strand at 159.591 kb on + strand at 159.592 kb on - strand at 159.609 kb on + strand at 159.610 kb on - strand at 159.721 kb on + strand, within SMa0286 at 159.880 kb on + strand, within SMa0286 at 160.076 kb on - strand at 160.160 kb on + strand, within SMa0287 at 160.162 kb on + strand, within SMa0287 at 160.162 kb on + strand, within SMa0287 at 160.163 kb on - strand, within SMa0287 at 160.163 kb on - strand, within SMa0287 at 160.279 kb on + strand, within SMa0287 at 160.347 kb on + strand, within SMa0287 at 160.348 kb on - strand, within SMa0287 at 160.366 kb on + strand, within SMa0287 at 160.399 kb on - strand, within SMa0287 at 160.554 kb on - strand at 160.554 kb on - strand at 160.663 kb on + strand, within SMa0288 at 160.663 kb on + strand, within SMa0288 at 160.664 kb on - strand, within SMa0288 at 160.735 kb on - strand, within SMa0288 at 160.751 kb on + strand, within SMa0288 at 160.752 kb on - strand, within SMa0288 at 160.803 kb on + strand, within SMa0288 at 160.804 kb on - strand, within SMa0288 at 160.891 kb on - strand, within SMa0288 at 160.891 kb on - strand, within SMa0288 at 161.063 kb on + strand, within SMa0288 at 161.063 kb on + strand, within SMa0288 at 161.064 kb on - strand, within SMa0288 at 161.064 kb on - strand, within SMa0288 at 161.139 kb on + strand, within SMa0288 at 161.140 kb on - strand, within SMa0288 at 161.140 kb on - strand, within SMa0288 at 161.174 kb on + strand, within SMa0288 at 161.174 kb on + strand, within SMa0288 at 161.183 kb on + strand, within SMa0288 at 161.184 kb on - strand, within SMa0288 at 161.184 kb on - strand, within SMa0288 at 161.243 kb on + strand, within SMa0288 at 161.362 kb on + strand at 161.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 159,072 - -3.1 159,135 + -0.8 159,135 + -2.1 159,136 - +1.6 159,136 - +0.9 159,136 - -0.0 159,416 + -2.7 159,416 + +0.5 159,416 + +1.0 159,417 - +1.0 159,417 - +0.1 159,515 + +1.7 159,515 + -0.3 159,516 - -1.8 159,528 + +0.4 159,529 - -0.3 159,529 - -0.0 159,591 + -2.3 159,591 + -3.0 159,592 - -1.8 159,609 + -1.8 159,610 - -0.1 159,721 + SMa0286 0.28 -0.0 159,880 + SMa0286 0.63 +0.9 160,076 - -1.5 160,160 + SMa0287 0.22 +1.7 160,162 + SMa0287 0.22 -1.3 160,162 + SMa0287 0.22 -0.8 160,163 - SMa0287 0.23 -2.1 160,163 - SMa0287 0.23 +0.0 160,279 + SMa0287 0.49 -0.0 160,347 + SMa0287 0.64 -1.6 160,348 - SMa0287 0.64 +1.0 160,366 + SMa0287 0.68 -1.3 160,399 - SMa0287 0.75 -1.0 160,554 - -2.7 160,554 - -2.6 160,663 + SMa0288 0.19 +0.4 160,663 + SMa0288 0.19 -0.8 160,664 - SMa0288 0.19 -1.2 160,735 - SMa0288 0.27 -2.3 160,751 + SMa0288 0.29 +0.5 160,752 - SMa0288 0.30 +0.6 160,803 + SMa0288 0.36 +0.1 160,804 - SMa0288 0.36 -0.1 160,891 - SMa0288 0.46 -3.0 160,891 - SMa0288 0.46 +1.4 161,063 + SMa0288 0.67 +1.5 161,063 + SMa0288 0.67 -0.3 161,064 - SMa0288 0.67 -0.3 161,064 - SMa0288 0.67 +0.6 161,139 + SMa0288 0.76 +3.1 161,140 - SMa0288 0.76 +0.3 161,140 - SMa0288 0.76 +1.0 161,174 + SMa0288 0.80 +0.1 161,174 + SMa0288 0.80 +0.1 161,183 + SMa0288 0.81 -1.7 161,184 - SMa0288 0.81 -0.3 161,184 - SMa0288 0.81 -2.9 161,243 + SMa0288 0.88 -0.5 161,362 + +3.2 161,363 - +1.7
Or see this region's nucleotide sequence