Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20222 and SM_b22001 are separated by 699 nucleotides SM_b22001 and SM_b20225 are separated by 281 nucleotides
SM_b20222: SM_b20222 - hypothetical protein, at 229,750 to 230,172
_b20222
SM_b22001: SM_b22001 - hypothetical protein, at 230,872 to 231,375
_b22001
SM_b20225: SM_b20225 - osmotically inducible sensory protein, at 231,657 to 232,343
_b20225
Position (kb) 230
231
232 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 230.152 kb on - strand at 230.152 kb on - strand at 230.205 kb on + strand at 230.223 kb on + strand at 230.223 kb on + strand at 230.224 kb on - strand at 230.224 kb on - strand at 230.541 kb on + strand at 230.541 kb on + strand at 230.542 kb on - strand at 230.686 kb on + strand at 230.687 kb on - strand at 230.725 kb on + strand at 230.779 kb on + strand at 230.865 kb on - strand at 230.903 kb on + strand at 230.903 kb on + strand at 231.218 kb on - strand, within SM_b22001 at 231.245 kb on + strand, within SM_b22001 at 231.323 kb on - strand, within SM_b22001 at 231.443 kb on + strand at 231.443 kb on + strand at 231.443 kb on + strand at 231.444 kb on - strand at 231.444 kb on - strand at 231.456 kb on + strand at 231.457 kb on - strand at 231.612 kb on + strand at 231.850 kb on + strand, within SM_b20225 at 231.926 kb on - strand, within SM_b20225 at 232.075 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.094 kb on - strand, within SM_b20225 at 232.123 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.163 kb on - strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.265 kb on - strand, within SM_b20225
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 229,937 + SM_b20222 0.44 +0.9 229,937 + SM_b20222 0.44 +4.1 229,937 + SM_b20222 0.44 +1.2 229,938 - SM_b20222 0.44 +0.4 229,938 - SM_b20222 0.44 +1.7 229,938 - SM_b20222 0.44 -0.2 230,152 - +2.6 230,152 - -1.1 230,205 + +1.2 230,223 + -4.6 230,223 + -1.2 230,224 - -0.4 230,224 - -0.4 230,541 + +0.1 230,541 + -1.1 230,542 - +0.5 230,686 + -0.3 230,687 - +0.6 230,725 + -0.8 230,779 + -0.9 230,865 - +0.3 230,903 + +0.3 230,903 + -0.3 231,218 - SM_b22001 0.69 +1.9 231,245 + SM_b22001 0.74 -2.6 231,323 - SM_b22001 0.89 -1.7 231,443 + -1.6 231,443 + +0.1 231,443 + +1.4 231,444 - +0.0 231,444 - +0.4 231,456 + +1.4 231,457 - -3.2 231,612 + -0.0 231,850 + SM_b20225 0.28 -1.4 231,926 - SM_b20225 0.39 +1.6 232,075 + SM_b20225 0.61 -0.3 232,093 + SM_b20225 0.63 -0.6 232,093 + SM_b20225 0.63 -0.2 232,094 - SM_b20225 0.64 -0.9 232,123 + SM_b20225 0.68 +0.2 232,162 + SM_b20225 0.74 -1.4 232,162 + SM_b20225 0.74 +0.1 232,162 + SM_b20225 0.74 -0.0 232,163 - SM_b20225 0.74 +0.6 232,264 + SM_b20225 0.88 +2.1 232,264 + SM_b20225 0.88 +1.2 232,265 - SM_b20225 0.89 +0.5
Or see this region's nucleotide sequence