Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21494

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21492 and SM_b21493 are separated by 33 nucleotidesSM_b21493 and SM_b21494 are separated by 126 nucleotidesSM_b21494 and SM_b21689 are separated by 34 nucleotidesSM_b21689 and SM_b21495 are separated by 283 nucleotides SM_b21492: SM_b21492 - hypothetical protein, at 1,414,210 to 1,414,872 _b21492 SM_b21493: SM_b21493 - AsnC family transcriptional regulator, at 1,414,906 to 1,415,367 _b21493 SM_b21494: SM_b21494 - ornithine cyclodeaminase, at 1,415,494 to 1,416,561 _b21494 SM_b21689: SM_b21689 - hypothetical protein, at 1,416,596 to 1,416,778 _b21689 SM_b21495: SM_b21495 - protease, at 1,417,062 to 1,417,565 _b21495 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1414.524 kb on + strand, within SM_b21492at 1414.526 kb on + strand, within SM_b21492at 1414.587 kb on - strand, within SM_b21492at 1414.676 kb on + strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.677 kb on - strand, within SM_b21492at 1414.710 kb on - strand, within SM_b21492at 1414.848 kb on + strandat 1414.889 kb on + strandat 1415.009 kb on - strand, within SM_b21493at 1415.009 kb on - strand, within SM_b21493at 1415.009 kb on - strand, within SM_b21493at 1415.010 kb on + strand, within SM_b21493at 1415.150 kb on + strand, within SM_b21493at 1415.719 kb on + strand, within SM_b21494at 1415.720 kb on - strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.731 kb on + strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.732 kb on - strand, within SM_b21494at 1415.829 kb on + strand, within SM_b21494at 1416.002 kb on - strand, within SM_b21494at 1416.124 kb on - strand, within SM_b21494at 1416.183 kb on + strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.184 kb on - strand, within SM_b21494at 1416.224 kb on + strand, within SM_b21494at 1416.704 kb on + strand, within SM_b21689at 1416.705 kb on - strand, within SM_b21689at 1416.738 kb on + strand, within SM_b21689at 1416.886 kb on - strandat 1416.933 kb on + strandat 1417.281 kb on + strand, within SM_b21495at 1417.282 kb on - strand, within SM_b21495at 1417.335 kb on - strand, within SM_b21495at 1417.441 kb on - strand, within SM_b21495at 1417.441 kb on - strand, within SM_b21495at 1417.491 kb on - strand, within SM_b21495at 1417.493 kb on - strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.500 kb on + strand, within SM_b21495at 1417.501 kb on - strand, within SM_b21495at 1417.528 kb on - strandat 1417.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,414,524 + SM_b21492 0.47 +1.9
1,414,526 + SM_b21492 0.48 +0.2
1,414,587 - SM_b21492 0.57 +1.7
1,414,676 + SM_b21492 0.70 +0.4
1,414,677 - SM_b21492 0.70 -0.7
1,414,677 - SM_b21492 0.70 +0.2
1,414,677 - SM_b21492 0.70 -0.3
1,414,677 - SM_b21492 0.70 +0.2
1,414,710 - SM_b21492 0.75 -3.1
1,414,848 + -0.1
1,414,889 + -4.2
1,415,009 - SM_b21493 0.22 +0.3
1,415,009 - SM_b21493 0.22 -0.8
1,415,009 - SM_b21493 0.22 -1.1
1,415,010 + SM_b21493 0.23 +0.7
1,415,150 + SM_b21493 0.53 +2.1
1,415,719 + SM_b21494 0.21 -0.6
1,415,720 - SM_b21494 0.21 -1.1
1,415,731 + SM_b21494 0.22 -0.3
1,415,731 + SM_b21494 0.22 -1.5
1,415,732 - SM_b21494 0.22 +0.2
1,415,732 - SM_b21494 0.22 -0.5
1,415,829 + SM_b21494 0.31 -1.0
1,416,002 - SM_b21494 0.48 +0.0
1,416,124 - SM_b21494 0.59 -0.3
1,416,183 + SM_b21494 0.65 -1.1
1,416,184 - SM_b21494 0.65 -3.1
1,416,184 - SM_b21494 0.65 -1.1
1,416,224 + SM_b21494 0.68 -0.6
1,416,704 + SM_b21689 0.59 +0.3
1,416,705 - SM_b21689 0.60 -0.3
1,416,738 + SM_b21689 0.78 +3.0
1,416,886 - -0.6
1,416,933 + -3.0
1,417,281 + SM_b21495 0.43 -0.7
1,417,282 - SM_b21495 0.44 +0.4
1,417,335 - SM_b21495 0.54 -3.1
1,417,441 - SM_b21495 0.75 -1.4
1,417,441 - SM_b21495 0.75 -0.6
1,417,491 - SM_b21495 0.85 -0.2
1,417,493 - SM_b21495 0.86 +0.6
1,417,500 + SM_b21495 0.87 -1.4
1,417,500 + SM_b21495 0.87 -0.3
1,417,500 + SM_b21495 0.87 -2.3
1,417,501 - SM_b21495 0.87 +0.3
1,417,528 - -1.1
1,417,533 + -2.5

Or see this region's nucleotide sequence