Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21342

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21340 and SM_b21341 are separated by 29 nucleotidesSM_b21341 and SM_b21342 are separated by 53 nucleotidesSM_b21342 and SM_b21343 are separated by 6 nucleotides SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831 _b21340 SM_b21341: SM_b21341 - hypothetical protein, at 1,006,861 to 1,007,709 _b21341 SM_b21342: SM_b21342 - sugar uptake ABC transporter permease, at 1,007,763 to 1,008,761 _b21342 SM_b21343: SM_b21343 - sugar uptake ABC transporter permease, at 1,008,768 to 1,009,772 _b21343 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1006.982 kb on + strand, within SM_b21341at 1006.982 kb on + strand, within SM_b21341at 1007.256 kb on + strand, within SM_b21341at 1007.361 kb on - strand, within SM_b21341at 1007.409 kb on - strand, within SM_b21341at 1007.857 kb on + strandat 1007.978 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.992 kb on - strand, within SM_b21342at 1008.103 kb on + strand, within SM_b21342at 1008.227 kb on - strand, within SM_b21342at 1008.304 kb on + strand, within SM_b21342at 1008.305 kb on - strand, within SM_b21342at 1008.353 kb on - strand, within SM_b21342at 1008.481 kb on + strand, within SM_b21342at 1008.604 kb on + strand, within SM_b21342at 1008.605 kb on - strand, within SM_b21342at 1008.629 kb on - strand, within SM_b21342at 1008.872 kb on - strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.073 kb on - strand, within SM_b21343at 1009.101 kb on + strand, within SM_b21343at 1009.697 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,006,982 + SM_b21341 0.14 +0.8
1,006,982 + SM_b21341 0.14 +1.1
1,007,256 + SM_b21341 0.47 -2.7
1,007,361 - SM_b21341 0.59 -2.8
1,007,409 - SM_b21341 0.65 +0.8
1,007,857 + +0.1
1,007,978 + SM_b21342 0.22 +3.4
1,007,991 + SM_b21342 0.23 +0.0
1,007,991 + SM_b21342 0.23 +1.1
1,007,991 + SM_b21342 0.23 +0.6
1,007,992 - SM_b21342 0.23 -2.7
1,008,103 + SM_b21342 0.34 -0.2
1,008,227 - SM_b21342 0.46 -4.2
1,008,304 + SM_b21342 0.54 +1.0
1,008,305 - SM_b21342 0.54 +1.7
1,008,353 - SM_b21342 0.59 -2.7
1,008,481 + SM_b21342 0.72 +1.2
1,008,604 + SM_b21342 0.84 -0.0
1,008,605 - SM_b21342 0.84 -2.2
1,008,629 - SM_b21342 0.87 +1.5
1,008,872 - SM_b21343 0.10 +2.0
1,009,072 + SM_b21343 0.30 -0.9
1,009,072 + SM_b21343 0.30 +0.5
1,009,072 + SM_b21343 0.30 +0.4
1,009,073 - SM_b21343 0.30 +1.4
1,009,101 + SM_b21343 0.33 +1.0
1,009,697 - +1.1

Or see this region's nucleotide sequence