Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21337

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21336 and SM_b21337 are separated by 126 nucleotidesSM_b21337 and SM_b21338 are separated by 3 nucleotidesSM_b21338 and SM_b21339 are separated by 1 nucleotides SM_b21336: SM_b21336 - AraC family transcriptional regulator, at 1,002,815 to 1,003,759 _b21336 SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548 _b21337 SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457 _b21338 SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791 _b21339 Position (kb) 1003 1004 1005Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1003.035 kb on + strand, within SM_b21336at 1003.101 kb on - strand, within SM_b21336at 1003.101 kb on - strand, within SM_b21336at 1003.184 kb on - strand, within SM_b21336at 1003.184 kb on - strand, within SM_b21336at 1003.188 kb on - strand, within SM_b21336at 1003.216 kb on + strand, within SM_b21336at 1003.260 kb on + strand, within SM_b21336at 1003.261 kb on - strand, within SM_b21336at 1003.314 kb on + strand, within SM_b21336at 1003.314 kb on + strand, within SM_b21336at 1003.343 kb on + strand, within SM_b21336at 1003.343 kb on + strand, within SM_b21336at 1003.344 kb on - strand, within SM_b21336at 1003.344 kb on - strand, within SM_b21336at 1003.381 kb on - strand, within SM_b21336at 1003.574 kb on + strand, within SM_b21336at 1003.581 kb on - strand, within SM_b21336at 1003.637 kb on - strand, within SM_b21336at 1004.340 kb on - strandat 1004.340 kb on - strand, within SM_b21337at 1004.483 kb on - strandat 1004.502 kb on - strandat 1004.567 kb on + strandat 1004.777 kb on - strandat 1004.777 kb on - strand, within SM_b21338at 1004.860 kb on - strand, within SM_b21338at 1004.860 kb on - strand, within SM_b21338at 1004.872 kb on + strand, within SM_b21338at 1004.919 kb on - strand, within SM_b21338at 1005.131 kb on + strand, within SM_b21338at 1005.200 kb on - strand, within SM_b21338at 1005.261 kb on - strand, within SM_b21338

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,003,035 + SM_b21336 0.23 +1.0
1,003,101 - SM_b21336 0.30 -1.0
1,003,101 - SM_b21336 0.30 -0.8
1,003,184 - SM_b21336 0.39 -3.1
1,003,184 - SM_b21336 0.39 +0.9
1,003,188 - SM_b21336 0.39 +1.4
1,003,216 + SM_b21336 0.42 -0.3
1,003,260 + SM_b21336 0.47 +0.6
1,003,261 - SM_b21336 0.47 +0.8
1,003,314 + SM_b21336 0.53 -1.8
1,003,314 + SM_b21336 0.53 -1.9
1,003,343 + SM_b21336 0.56 -2.7
1,003,343 + SM_b21336 0.56 -2.6
1,003,344 - SM_b21336 0.56 +0.3
1,003,344 - SM_b21336 0.56 -0.0
1,003,381 - SM_b21336 0.60 -1.4
1,003,574 + SM_b21336 0.80 -0.6
1,003,581 - SM_b21336 0.81 -1.2
1,003,637 - SM_b21336 0.87 -0.1
1,004,340 - +3.6
1,004,340 - SM_b21337 0.68 -1.7
1,004,483 - +0.1
1,004,502 - +0.4
1,004,567 + +0.7
1,004,777 - +1.2
1,004,777 - SM_b21338 0.25 -1.2
1,004,860 - SM_b21338 0.34 -0.4
1,004,860 - SM_b21338 0.34 -0.3
1,004,872 + SM_b21338 0.35 -0.5
1,004,919 - SM_b21338 0.41 +0.4
1,005,131 + SM_b21338 0.64 -0.1
1,005,200 - SM_b21338 0.72 +1.1
1,005,261 - SM_b21338 0.78 -0.8

Or see this region's nucleotide sequence