Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21294 and SM_b21295 are separated by 123 nucleotides SM_b21295 and SM_b21296 are separated by 270 nucleotides SM_b21296 and SM_b21297 are separated by 37 nucleotides
SM_b21294: SM_b21294 - Hsp20 family heat-shock protein, at 870,949 to 871,455
_b21294
SM_b21295: SM_b21295 - Hsp20 family heat-shock protein, at 871,579 to 872,163
_b21295
SM_b21296: SM_b21296 - hypothetical protein, at 872,434 to 872,739
_b21296
SM_b21297: SM_b21297 - bifunctional penicillin-binding protein, at 872,777 to 874,918
_b21297
Position (kb) 872
873 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 871.447 kb on + strand at 871.447 kb on + strand at 871.448 kb on - strand at 871.448 kb on - strand at 871.448 kb on - strand at 871.494 kb on + strand at 871.567 kb on - strand at 871.648 kb on + strand, within SM_b21295 at 871.648 kb on + strand, within SM_b21295 at 871.648 kb on + strand, within SM_b21295 at 871.649 kb on - strand, within SM_b21295 at 871.649 kb on - strand, within SM_b21295 at 871.742 kb on - strand, within SM_b21295 at 871.796 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 872.059 kb on - strand, within SM_b21295 at 872.157 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.302 kb on + strand at 872.302 kb on + strand at 872.345 kb on + strand at 872.345 kb on + strand at 872.516 kb on - strand, within SM_b21296 at 872.570 kb on - strand, within SM_b21296 at 872.610 kb on + strand, within SM_b21296 at 873.268 kb on - strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.377 kb on + strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.498 kb on + strand, within SM_b21297 at 873.706 kb on - strand, within SM_b21297
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 871,447 + +0.9 871,447 + -0.5 871,448 - -4.1 871,448 - -3.3 871,448 - +0.2 871,494 + +1.0 871,567 - +0.4 871,648 + SM_b21295 0.12 +0.3 871,648 + SM_b21295 0.12 -2.7 871,648 + SM_b21295 0.12 +1.3 871,649 - SM_b21295 0.12 +2.2 871,649 - SM_b21295 0.12 -2.8 871,742 - SM_b21295 0.28 -0.9 871,796 + SM_b21295 0.37 +0.9 871,802 + SM_b21295 0.38 -2.1 871,802 + SM_b21295 0.38 +0.2 872,059 - SM_b21295 0.82 +1.2 872,157 + -0.1 872,258 + +1.0 872,258 + -0.6 872,258 + +4.8 872,302 + +0.6 872,302 + -0.1 872,345 + -2.9 872,345 + +0.1 872,516 - SM_b21296 0.27 -2.2 872,570 - SM_b21296 0.44 +3.1 872,610 + SM_b21296 0.58 +0.3 873,268 - SM_b21297 0.23 +1.2 873,309 + SM_b21297 0.25 +0.4 873,309 + SM_b21297 0.25 +0.6 873,310 - SM_b21297 0.25 -1.7 873,310 - SM_b21297 0.25 +0.8 873,377 + SM_b21297 0.28 -4.7 873,378 - SM_b21297 0.28 +0.1 873,378 - SM_b21297 0.28 +1.0 873,498 + SM_b21297 0.34 -0.9 873,706 - SM_b21297 0.43 -1.3
Or see this region's nucleotide sequence