Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21304 and SM_b21143 are separated by 195 nucleotides SM_b21143 and SM_b21144 are separated by 190 nucleotides
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
SM_b21143: SM_b21143 - mercuric reductase, at 886,947 to 888,368
_b21143
SM_b21144: SM_b21144 - choline uptake ABC transporter substrate-binding protein precursor, at 888,559 to 889,476
_b21144
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 886.056 kb on + strand, within SM_b21304 at 886.057 kb on - strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.087 kb on - strand, within SM_b21304 at 886.690 kb on + strand at 886.691 kb on - strand at 886.691 kb on - strand at 886.949 kb on - strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.281 kb on + strand, within SM_b21143 at 887.281 kb on + strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.291 kb on - strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.456 kb on + strand, within SM_b21143 at 887.457 kb on - strand, within SM_b21143 at 887.458 kb on + strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.510 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.593 kb on - strand, within SM_b21143 at 887.784 kb on - strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.785 kb on + strand, within SM_b21143 at 887.786 kb on - strand, within SM_b21143 at 887.855 kb on - strand, within SM_b21143 at 888.149 kb on - strand, within SM_b21143 at 888.370 kb on - strand at 888.484 kb on + strand at 888.484 kb on + strand at 888.484 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.486 kb on + strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.487 kb on - strand at 888.794 kb on - strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.802 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.804 kb on + strand, within SM_b21144 at 888.805 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.872 kb on - strand, within SM_b21144 at 888.895 kb on + strand, within SM_b21144 at 888.896 kb on - strand, within SM_b21144 at 888.940 kb on - strand, within SM_b21144 at 889.213 kb on + strand, within SM_b21144 at 889.285 kb on + strand, within SM_b21144 at 889.286 kb on - strand, within SM_b21144
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 886,056 + SM_b21304 0.12 +0.0 886,057 - SM_b21304 0.13 -0.4 886,086 + SM_b21304 0.16 +0.9 886,086 + SM_b21304 0.16 -0.6 886,087 - SM_b21304 0.16 +1.1 886,690 + -0.1 886,691 - +0.1 886,691 - +0.6 886,949 - +1.0 887,047 + +0.5 887,047 + -0.6 887,047 + +0.4 887,047 + +0.1 887,047 + -1.4 887,047 + -0.7 887,048 - +0.8 887,048 - +0.8 887,048 - -1.3 887,281 + SM_b21143 0.23 +0.6 887,281 + SM_b21143 0.23 -2.6 887,282 - SM_b21143 0.24 -3.6 887,282 - SM_b21143 0.24 -0.9 887,282 - SM_b21143 0.24 +0.4 887,291 - SM_b21143 0.24 -0.9 887,365 + SM_b21143 0.29 +2.5 887,365 + SM_b21143 0.29 +0.9 887,366 - SM_b21143 0.29 +1.5 887,366 - SM_b21143 0.29 +0.4 887,456 + SM_b21143 0.36 -1.2 887,457 - SM_b21143 0.36 -2.0 887,458 + SM_b21143 0.36 +0.8 887,459 - SM_b21143 0.36 +0.1 887,459 - SM_b21143 0.36 +1.9 887,510 + SM_b21143 0.40 -1.0 887,592 + SM_b21143 0.45 -1.7 887,592 + SM_b21143 0.45 +0.3 887,593 - SM_b21143 0.45 +2.5 887,784 - SM_b21143 0.59 -0.7 887,785 + SM_b21143 0.59 +0.1 887,785 + SM_b21143 0.59 +1.7 887,785 + SM_b21143 0.59 -1.2 887,786 - SM_b21143 0.59 -0.6 887,855 - SM_b21143 0.64 -2.2 888,149 - SM_b21143 0.85 +0.5 888,370 - -0.0 888,484 + +2.4 888,484 + +0.6 888,484 + +0.6 888,486 + +0.4 888,486 + -1.5 888,486 + +0.5 888,486 + +0.3 888,486 + -1.2 888,486 + -0.0 888,486 + +0.2 888,487 - +1.4 888,487 - +1.4 888,487 - -0.1 888,487 - -1.0 888,487 - -1.9 888,487 - -2.1 888,487 - +1.7 888,487 - -2.4 888,487 - -1.0 888,487 - +0.3 888,487 - -0.0 888,487 - +0.1 888,794 - SM_b21144 0.26 +2.0 888,802 + SM_b21144 0.26 -1.9 888,802 + SM_b21144 0.26 +1.5 888,802 + SM_b21144 0.26 -0.6 888,804 + SM_b21144 0.27 +4.2 888,804 + SM_b21144 0.27 +1.3 888,805 - SM_b21144 0.27 +0.7 888,872 - SM_b21144 0.34 +0.4 888,872 - SM_b21144 0.34 +0.5 888,872 - SM_b21144 0.34 -0.4 888,895 + SM_b21144 0.37 +0.5 888,896 - SM_b21144 0.37 -1.6 888,940 - SM_b21144 0.42 -1.1 889,213 + SM_b21144 0.71 -2.0 889,285 + SM_b21144 0.79 +0.1 889,286 - SM_b21144 0.79 -2.0
Or see this region's nucleotide sequence