Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21136 and SM_b21137 are separated by 5 nucleotides SM_b21137 and SM_b21138 are separated by 13 nucleotides SM_b21138 and SM_b21139 are separated by 36 nucleotides SM_b21139 and SM_b21140 overlap by 4 nucleotides
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687
_b21140
Position (kb) 776
777
778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.559 kb on - strand, within SM_b21137 at 776.574 kb on - strand at 776.954 kb on + strand, within SM_b21138 at 777.000 kb on + strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.280 kb on - strand, within SM_b21138 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.713 kb on - strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.816 kb on + strand at 777.817 kb on - strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.854 kb on - strand at 778.019 kb on + strand, within SM_b21140 at 778.019 kb on + strand, within SM_b21140 at 778.104 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.219 kb on + strand, within SM_b21140 at 778.226 kb on + strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.280 kb on - strand, within SM_b21140 at 778.281 kb on + strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.365 kb on + strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 775,689 - SM_b21136 0.60 +1.5 775,703 - SM_b21136 0.62 +1.0 775,760 + SM_b21136 0.70 -0.7 775,785 - SM_b21136 0.74 +0.1 775,894 - SM_b21136 0.90 -0.7 776,195 + SM_b21137 0.34 +0.5 776,195 + SM_b21137 0.34 -3.1 776,196 - SM_b21137 0.34 -0.2 776,196 - SM_b21137 0.34 +1.0 776,196 - SM_b21137 0.34 +1.8 776,198 + SM_b21137 0.35 -1.7 776,198 + SM_b21137 0.35 -0.5 776,199 - SM_b21137 0.35 -3.5 776,199 - SM_b21137 0.35 -1.4 776,199 - SM_b21137 0.35 +0.7 776,219 - SM_b21137 0.38 +0.3 776,375 + SM_b21137 0.61 -1.2 776,375 + SM_b21137 0.61 +1.5 776,375 + SM_b21137 0.61 +0.1 776,375 + SM_b21137 0.61 +2.0 776,375 + SM_b21137 0.61 +0.1 776,376 - SM_b21137 0.62 -2.6 776,376 - SM_b21137 0.62 +0.2 776,559 - SM_b21137 0.89 +3.2 776,574 - +1.2 776,954 + SM_b21138 0.40 +0.4 777,000 + SM_b21138 0.46 +1.7 777,219 - SM_b21138 0.75 -0.3 777,219 - SM_b21138 0.75 +0.4 777,280 - SM_b21138 0.83 -0.8 777,538 - SM_b21139 0.24 +0.0 777,538 - SM_b21139 0.24 -0.4 777,538 - SM_b21139 0.24 +0.9 777,538 - SM_b21139 0.24 -0.8 777,713 - SM_b21139 0.69 +0.2 777,723 + SM_b21139 0.72 -0.7 777,723 + SM_b21139 0.72 +0.4 777,723 + SM_b21139 0.72 +0.5 777,816 + +1.3 777,817 - -3.8 777,853 + -0.1 777,853 + +0.2 777,854 - -1.7 778,019 + SM_b21140 0.22 -2.5 778,019 + SM_b21140 0.22 -1.7 778,104 - SM_b21140 0.32 -3.1 778,122 - SM_b21140 0.34 -1.0 778,122 - SM_b21140 0.34 -2.9 778,219 + SM_b21140 0.46 -2.5 778,226 + SM_b21140 0.46 -1.6 778,227 - SM_b21140 0.46 +1.2 778,227 - SM_b21140 0.46 +0.3 778,280 - SM_b21140 0.53 +0.4 778,281 + SM_b21140 0.53 +0.2 778,282 - SM_b21140 0.53 -1.2 778,282 - SM_b21140 0.53 +1.6 778,365 + SM_b21140 0.62 +1.0 778,366 - SM_b21140 0.63 -3.2 778,366 - SM_b21140 0.63 -3.8
Or see this region's nucleotide sequence