Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20842 and SM_b20843 are separated by 3 nucleotides SM_b20843 and SM_b21013 are separated by 425 nucleotides
SM_b20842: SM_b20842 - TonB-dependent receptor protein, at 633,438 to 634,667
_b20842
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 633.730 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.745 kb on - strand, within SM_b20842 at 633.910 kb on + strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.103 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.263 kb on + strand, within SM_b20842 at 634.291 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.571 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.673 kb on - strand at 634.712 kb on - strand at 634.799 kb on - strand at 634.813 kb on + strand at 634.814 kb on - strand at 634.814 kb on - strand at 634.867 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 635.273 kb on - strand, within SM_b20843 at 635.479 kb on + strand, within SM_b20843 at 635.568 kb on - strand, within SM_b20843 at 635.867 kb on + strand, within SM_b20843 at 635.944 kb on + strand, within SM_b20843 at 635.953 kb on + strand, within SM_b20843 at 635.992 kb on + strand, within SM_b20843 at 636.117 kb on - strand at 636.368 kb on - strand at 636.508 kb on + strand at 636.517 kb on + strand at 636.517 kb on + strand at 636.518 kb on - strand at 636.535 kb on - strand at 636.535 kb on - strand at 636.719 kb on + strand, within SM_b21013 at 636.753 kb on + strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 633,730 - SM_b20842 0.24 -0.0 633,730 - SM_b20842 0.24 -0.5 633,745 - SM_b20842 0.25 +0.4 633,910 + SM_b20842 0.38 -1.0 633,911 - SM_b20842 0.38 -1.5 633,911 - SM_b20842 0.38 +0.1 634,046 + SM_b20842 0.49 -0.7 634,046 + SM_b20842 0.49 -3.1 634,047 - SM_b20842 0.50 -1.1 634,047 - SM_b20842 0.50 -2.6 634,102 + SM_b20842 0.54 +0.7 634,102 + SM_b20842 0.54 +1.8 634,103 - SM_b20842 0.54 +0.5 634,151 - SM_b20842 0.58 +0.4 634,151 - SM_b20842 0.58 -0.3 634,151 - SM_b20842 0.58 +1.7 634,258 + SM_b20842 0.67 +0.5 634,258 + SM_b20842 0.67 -1.5 634,258 + SM_b20842 0.67 -0.0 634,258 + SM_b20842 0.67 -0.3 634,263 + SM_b20842 0.67 -0.4 634,291 - SM_b20842 0.69 +0.0 634,307 - SM_b20842 0.71 +2.6 634,307 - SM_b20842 0.71 -4.0 634,307 - SM_b20842 0.71 -0.4 634,307 - SM_b20842 0.71 -1.3 634,307 - SM_b20842 0.71 -1.4 634,439 - SM_b20842 0.81 -0.4 634,439 - SM_b20842 0.81 -2.5 634,448 - SM_b20842 0.82 -0.7 634,448 - SM_b20842 0.82 -0.6 634,571 + +1.8 634,627 - +0.4 634,627 - +1.0 634,627 - +0.2 634,673 - -0.0 634,712 - +1.0 634,799 - +0.1 634,813 + -0.6 634,814 - -0.7 634,814 - -0.3 634,867 - SM_b20843 0.13 -2.7 634,871 - SM_b20843 0.13 +0.2 634,871 - SM_b20843 0.13 -2.3 634,871 - SM_b20843 0.13 +0.3 634,871 - SM_b20843 0.13 -0.9 635,273 - SM_b20843 0.39 +1.6 635,479 + SM_b20843 0.53 +0.7 635,568 - SM_b20843 0.59 -2.8 635,867 + SM_b20843 0.78 +0.3 635,944 + SM_b20843 0.83 -1.8 635,953 + SM_b20843 0.84 +1.0 635,992 + SM_b20843 0.87 -2.8 636,117 - -1.4 636,368 - -0.5 636,508 + -0.8 636,517 + -1.3 636,517 + -2.4 636,518 - +0.4 636,535 - -0.5 636,535 - +0.6 636,719 + SM_b21013 0.21 +1.0 636,753 + SM_b21013 0.28 -0.4 636,754 - SM_b21013 0.28 +0.8 636,754 - SM_b21013 0.28 -1.9 636,754 - SM_b21013 0.28 -0.5 637,081 + +2.0 637,082 - +0.8 637,082 - +0.2 637,090 + -1.0 637,091 - +1.1
Or see this region's nucleotide sequence