Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20670

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20668 and SM_b20669 are separated by 11 nucleotidesSM_b20669 and SM_b20670 are separated by 3 nucleotidesSM_b20670 and SM_b20671 are separated by 116 nucleotides SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852 _b20668 SM_b20669: SM_b20669 - hydroxypyruvate isomerase, at 1,469,864 to 1,470,640 _b20669 SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921 _b20670 SM_b20671: SM_b20671 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,472,038 to 1,473,006 _b20671 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1469.691 kb on - strand, within SM_b20668at 1469.745 kb on + strand, within SM_b20668at 1469.745 kb on + strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.843 kb on + strandat 1469.850 kb on + strandat 1470.221 kb on + strand, within SM_b20669at 1470.395 kb on + strand, within SM_b20669at 1470.395 kb on + strand, within SM_b20669at 1470.445 kb on + strand, within SM_b20669at 1470.446 kb on - strand, within SM_b20669at 1470.446 kb on - strand, within SM_b20669at 1470.463 kb on + strand, within SM_b20669at 1470.464 kb on - strand, within SM_b20669at 1470.518 kb on + strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.524 kb on + strand, within SM_b20669at 1470.524 kb on + strand, within SM_b20669at 1470.525 kb on - strand, within SM_b20669at 1470.555 kb on - strand, within SM_b20669at 1470.578 kb on + strandat 1470.579 kb on - strandat 1470.678 kb on - strandat 1470.890 kb on + strand, within SM_b20670at 1470.891 kb on - strand, within SM_b20670at 1470.891 kb on - strand, within SM_b20670at 1471.022 kb on + strand, within SM_b20670at 1471.255 kb on - strand, within SM_b20670at 1471.350 kb on + strand, within SM_b20670at 1471.480 kb on + strand, within SM_b20670at 1471.481 kb on - strand, within SM_b20670at 1471.481 kb on - strand, within SM_b20670at 1471.635 kb on - strand, within SM_b20670at 1472.039 kb on + strandat 1472.303 kb on + strand, within SM_b20671at 1472.303 kb on + strand, within SM_b20671at 1472.304 kb on - strand, within SM_b20671at 1472.327 kb on + strand, within SM_b20671at 1472.329 kb on + strand, within SM_b20671at 1472.330 kb on - strand, within SM_b20671at 1472.378 kb on + strand, within SM_b20671at 1472.378 kb on + strand, within SM_b20671at 1472.379 kb on - strand, within SM_b20671at 1472.379 kb on - strand, within SM_b20671at 1472.506 kb on + strand, within SM_b20671at 1472.507 kb on - strand, within SM_b20671at 1472.517 kb on + strand, within SM_b20671at 1472.562 kb on - strand, within SM_b20671at 1472.615 kb on + strand, within SM_b20671at 1472.616 kb on - strand, within SM_b20671at 1472.797 kb on + strand, within SM_b20671

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,469,691 - SM_b20668 0.82 -3.2
1,469,745 + SM_b20668 0.88 +0.3
1,469,745 + SM_b20668 0.88 -0.1
1,469,746 - SM_b20668 0.88 -0.3
1,469,746 - SM_b20668 0.88 +0.8
1,469,746 - SM_b20668 0.88 -3.2
1,469,843 + -0.3
1,469,850 + +0.7
1,470,221 + SM_b20669 0.46 -0.3
1,470,395 + SM_b20669 0.68 -0.6
1,470,395 + SM_b20669 0.68 +1.1
1,470,445 + SM_b20669 0.75 -0.6
1,470,446 - SM_b20669 0.75 -0.2
1,470,446 - SM_b20669 0.75 -1.6
1,470,463 + SM_b20669 0.77 +0.4
1,470,464 - SM_b20669 0.77 +1.0
1,470,518 + SM_b20669 0.84 +1.1
1,470,519 - SM_b20669 0.84 -0.6
1,470,519 - SM_b20669 0.84 -1.5
1,470,519 - SM_b20669 0.84 -4.1
1,470,524 + SM_b20669 0.85 +2.5
1,470,524 + SM_b20669 0.85 -1.1
1,470,525 - SM_b20669 0.85 +0.8
1,470,555 - SM_b20669 0.89 -0.9
1,470,578 + +1.3
1,470,579 - -0.1
1,470,678 - +2.1
1,470,890 + SM_b20670 0.19 +0.8
1,470,891 - SM_b20670 0.19 +2.2
1,470,891 - SM_b20670 0.19 -2.7
1,471,022 + SM_b20670 0.30 -2.2
1,471,255 - SM_b20670 0.48 +1.2
1,471,350 + SM_b20670 0.55 -1.6
1,471,480 + SM_b20670 0.65 +3.0
1,471,481 - SM_b20670 0.65 +1.0
1,471,481 - SM_b20670 0.65 +1.8
1,471,635 - SM_b20670 0.78 -1.6
1,472,039 + +1.3
1,472,303 + SM_b20671 0.27 -0.2
1,472,303 + SM_b20671 0.27 -0.2
1,472,304 - SM_b20671 0.27 -0.3
1,472,327 + SM_b20671 0.30 +1.0
1,472,329 + SM_b20671 0.30 +1.4
1,472,330 - SM_b20671 0.30 -3.0
1,472,378 + SM_b20671 0.35 -2.4
1,472,378 + SM_b20671 0.35 +0.8
1,472,379 - SM_b20671 0.35 +1.0
1,472,379 - SM_b20671 0.35 -1.3
1,472,506 + SM_b20671 0.48 +0.2
1,472,507 - SM_b20671 0.48 +0.5
1,472,517 + SM_b20671 0.49 +1.0
1,472,562 - SM_b20671 0.54 +1.1
1,472,615 + SM_b20671 0.60 +0.2
1,472,616 - SM_b20671 0.60 -0.8
1,472,797 + SM_b20671 0.78 +0.4

Or see this region's nucleotide sequence