Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20495

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20494 and SM_b20495 are separated by 880 nucleotidesSM_b20495 and SM_b20496 are separated by 432 nucleotides SM_b20494: SM_b20494 - transcriptional regulator, at 511,441 to 512,337 _b20494 SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921 _b20495 SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964 _b20496 Position (kb) 513 514 515Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 512.254 kb on + strandat 512.254 kb on + strandat 512.254 kb on + strandat 512.255 kb on - strandat 512.526 kb on + strandat 512.526 kb on + strandat 512.529 kb on + strandat 512.530 kb on - strandat 512.530 kb on - strandat 512.553 kb on + strandat 512.561 kb on + strandat 512.562 kb on - strandat 512.614 kb on - strandat 512.614 kb on - strandat 512.707 kb on + strandat 512.707 kb on + strandat 512.707 kb on + strandat 512.732 kb on + strandat 512.748 kb on + strandat 513.061 kb on + strandat 513.061 kb on + strandat 513.062 kb on - strandat 513.103 kb on + strandat 513.246 kb on + strandat 513.293 kb on + strandat 513.294 kb on - strandat 513.356 kb on - strandat 513.440 kb on + strand, within SM_b20495at 513.718 kb on + strand, within SM_b20495at 513.718 kb on + strand, within SM_b20495at 513.719 kb on - strand, within SM_b20495at 513.737 kb on + strand, within SM_b20495at 513.738 kb on - strand, within SM_b20495at 513.801 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.945 kb on - strand, within SM_b20495at 513.971 kb on - strand, within SM_b20495at 513.971 kb on - strand, within SM_b20495at 514.058 kb on + strand, within SM_b20495at 514.059 kb on - strand, within SM_b20495at 514.061 kb on + strand, within SM_b20495at 514.077 kb on - strand, within SM_b20495at 514.127 kb on + strand, within SM_b20495at 514.158 kb on - strand, within SM_b20495at 514.170 kb on - strand, within SM_b20495at 514.263 kb on + strand, within SM_b20495at 514.418 kb on + strand, within SM_b20495at 514.418 kb on - strand, within SM_b20495at 514.420 kb on + strand, within SM_b20495at 514.421 kb on - strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.688 kb on + strand, within SM_b20495at 514.689 kb on - strand, within SM_b20495at 514.741 kb on + strand, within SM_b20495at 514.810 kb on - strandat 514.820 kb on + strandat 514.885 kb on - strandat 514.885 kb on - strandat 515.144 kb on + strandat 515.145 kb on - strandat 515.356 kb on - strandat 515.718 kb on + strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.823 kb on + strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.918 kb on + strand, within SM_b20496at 515.919 kb on - strand, within SM_b20496

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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512,254 + +0.6
512,254 + +3.1
512,254 + +1.5
512,255 - +1.1
512,526 + +3.0
512,526 + -1.4
512,529 + +0.6
512,530 - +0.0
512,530 - +0.7
512,553 + -1.5
512,561 + +1.1
512,562 - +0.3
512,614 - +1.3
512,614 - -0.9
512,707 + +2.0
512,707 + -2.3
512,707 + -0.9
512,732 + +2.4
512,748 + -2.8
513,061 + +0.6
513,061 + -0.6
513,062 - -0.5
513,103 + +0.0
513,246 + -0.9
513,293 + -0.3
513,294 - -0.2
513,356 - -2.2
513,440 + SM_b20495 0.13 +0.4
513,718 + SM_b20495 0.29 +1.1
513,718 + SM_b20495 0.29 +1.1
513,719 - SM_b20495 0.29 -1.5
513,737 + SM_b20495 0.30 +0.3
513,738 - SM_b20495 0.31 -0.5
513,801 - SM_b20495 0.34 +1.4
513,945 - SM_b20495 0.43 +0.2
513,945 - SM_b20495 0.43 -0.0
513,945 - SM_b20495 0.43 +0.3
513,945 - SM_b20495 0.43 -3.6
513,945 - SM_b20495 0.43 -0.4
513,945 - SM_b20495 0.43 -0.1
513,971 - SM_b20495 0.44 +1.1
513,971 - SM_b20495 0.44 -1.1
514,058 + SM_b20495 0.49 +0.1
514,059 - SM_b20495 0.49 -1.5
514,061 + SM_b20495 0.49 +1.0
514,077 - SM_b20495 0.50 -2.6
514,127 + SM_b20495 0.53 -4.0
514,158 - SM_b20495 0.55 +0.3
514,170 - SM_b20495 0.56 -0.5
514,263 + SM_b20495 0.61 +0.8
514,418 + SM_b20495 0.70 +0.3
514,418 - SM_b20495 0.70 -2.8
514,420 + SM_b20495 0.71 -0.0
514,421 - SM_b20495 0.71 +0.6
514,664 + SM_b20495 0.85 +0.4
514,664 + SM_b20495 0.85 -0.6
514,664 + SM_b20495 0.85 +2.7
514,664 + SM_b20495 0.85 -1.4
514,664 + SM_b20495 0.85 -0.5
514,664 + SM_b20495 0.85 +1.2
514,664 + SM_b20495 0.85 +0.8
514,665 - SM_b20495 0.85 -0.8
514,665 - SM_b20495 0.85 +1.1
514,665 - SM_b20495 0.85 +0.2
514,667 - SM_b20495 0.85 -1.6
514,667 - SM_b20495 0.85 +2.1
514,667 - SM_b20495 0.85 +0.8
514,667 - SM_b20495 0.85 +1.1
514,667 - SM_b20495 0.85 -0.5
514,688 + SM_b20495 0.86 -3.8
514,689 - SM_b20495 0.86 +0.6
514,741 + SM_b20495 0.89 -4.0
514,810 - +0.5
514,820 + -1.1
514,885 - +2.8
514,885 - +1.0
515,144 + +1.5
515,145 - +0.4
515,356 - -2.3
515,718 + SM_b20496 0.23 +0.5
515,719 - SM_b20496 0.23 -2.3
515,719 - SM_b20496 0.23 -0.6
515,719 - SM_b20496 0.23 -0.8
515,823 + SM_b20496 0.29 +0.1
515,875 - SM_b20496 0.32 -0.2
515,875 - SM_b20496 0.32 -0.2
515,875 - SM_b20496 0.32 -2.4
515,875 - SM_b20496 0.32 +1.9
515,918 + SM_b20496 0.35 -1.9
515,919 - SM_b20496 0.35 -0.5

Or see this region's nucleotide sequence