Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20463 and SM_b20464 are separated by 188 nucleotides SM_b20464 and SM_b20465 are separated by 165 nucleotides SM_b20465 and SM_b20466 are separated by 174 nucleotides
SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408
_b20463
SM_b20464: SM_b20464 - hypothetical protein, at 476,597 to 476,899
_b20464
SM_b20465: SM_b20465 - hypothetical protein, at 477,065 to 478,135
_b20465
SM_b20466: SM_b20466 - glucanase, at 478,310 to 479,467
_b20466
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.136 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.176 kb on + strand, within SM_b20463 at 476.263 kb on - strand, within SM_b20463 at 476.292 kb on + strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.293 kb on - strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.355 kb on + strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.356 kb on - strand, within SM_b20463 at 476.509 kb on + strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.510 kb on - strand at 476.598 kb on + strand at 476.599 kb on - strand at 476.648 kb on - strand, within SM_b20464 at 476.649 kb on + strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 476.650 kb on - strand, within SM_b20464 at 477.155 kb on + strand at 477.156 kb on - strand at 477.156 kb on - strand at 477.239 kb on - strand, within SM_b20465 at 477.239 kb on - strand, within SM_b20465 at 477.392 kb on + strand, within SM_b20465 at 477.393 kb on - strand, within SM_b20465 at 477.394 kb on + strand, within SM_b20465 at 477.395 kb on - strand, within SM_b20465 at 477.530 kb on + strand, within SM_b20465 at 477.531 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.626 kb on - strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.692 kb on + strand, within SM_b20465 at 477.693 kb on - strand, within SM_b20465 at 477.725 kb on + strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.726 kb on - strand, within SM_b20465 at 477.769 kb on + strand, within SM_b20465 at 477.770 kb on - strand, within SM_b20465 at 477.916 kb on - strand, within SM_b20465 at 478.048 kb on + strand at 478.048 kb on + strand at 478.048 kb on + strand at 478.048 kb on + strand at 478.049 kb on - strand at 478.051 kb on - strand at 478.051 kb on - strand at 478.173 kb on + strand at 478.181 kb on + strand at 478.181 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.186 kb on + strand at 478.341 kb on - strand at 478.659 kb on - strand, within SM_b20466 at 478.742 kb on - strand, within SM_b20466 at 478.788 kb on + strand, within SM_b20466 at 478.788 kb on + strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.789 kb on - strand, within SM_b20466 at 478.842 kb on + strand, within SM_b20466 at 478.986 kb on + strand, within SM_b20466 at 478.986 kb on + strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 478.987 kb on - strand, within SM_b20466 at 479.041 kb on - strand, within SM_b20466 at 479.126 kb on + strand, within SM_b20466 at 479.127 kb on - strand, within SM_b20466 at 479.127 kb on - strand, within SM_b20466
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 476,136 + SM_b20463 0.46 -2.4 476,176 + SM_b20463 0.54 +2.1 476,176 + SM_b20463 0.54 -2.4 476,176 + SM_b20463 0.54 -1.6 476,263 - SM_b20463 0.71 +2.0 476,292 + SM_b20463 0.77 -2.2 476,293 - SM_b20463 0.77 +1.2 476,293 - SM_b20463 0.77 +1.1 476,355 + SM_b20463 0.89 -2.4 476,355 + SM_b20463 0.89 -1.7 476,355 + SM_b20463 0.89 -2.8 476,356 - SM_b20463 0.90 -0.7 476,356 - SM_b20463 0.90 -2.9 476,356 - SM_b20463 0.90 -1.8 476,509 + +1.1 476,510 - -0.2 476,510 - +1.7 476,510 - +1.8 476,598 + +1.8 476,599 - +0.3 476,648 - SM_b20464 0.17 -0.4 476,649 + SM_b20464 0.17 +0.9 476,650 - SM_b20464 0.17 +0.5 476,650 - SM_b20464 0.17 -0.2 476,650 - SM_b20464 0.17 -2.0 476,650 - SM_b20464 0.17 -0.4 476,650 - SM_b20464 0.17 +0.8 477,155 + -0.8 477,156 - -0.8 477,156 - -0.1 477,239 - SM_b20465 0.16 +0.9 477,239 - SM_b20465 0.16 +0.0 477,392 + SM_b20465 0.31 +0.4 477,393 - SM_b20465 0.31 +0.7 477,394 + SM_b20465 0.31 -0.5 477,395 - SM_b20465 0.31 +1.0 477,530 + SM_b20465 0.43 -0.7 477,531 - SM_b20465 0.44 -0.4 477,626 - SM_b20465 0.52 +0.4 477,626 - SM_b20465 0.52 +0.7 477,692 + SM_b20465 0.59 -0.3 477,692 + SM_b20465 0.59 +0.6 477,692 + SM_b20465 0.59 +1.0 477,693 - SM_b20465 0.59 +0.4 477,725 + SM_b20465 0.62 -0.4 477,726 - SM_b20465 0.62 -0.3 477,726 - SM_b20465 0.62 -0.5 477,769 + SM_b20465 0.66 +0.6 477,770 - SM_b20465 0.66 +1.3 477,916 - SM_b20465 0.79 +1.6 478,048 + +1.2 478,048 + -0.5 478,048 + -0.2 478,048 + -2.1 478,049 - +0.7 478,051 - -3.0 478,051 - +1.5 478,173 + +2.0 478,181 + -3.0 478,181 + -0.6 478,186 + -0.3 478,186 + -0.9 478,186 + +1.3 478,186 + +0.8 478,341 - +0.0 478,659 - SM_b20466 0.30 -0.2 478,742 - SM_b20466 0.37 +1.1 478,788 + SM_b20466 0.41 +1.5 478,788 + SM_b20466 0.41 -2.6 478,789 - SM_b20466 0.41 +1.7 478,789 - SM_b20466 0.41 -1.4 478,789 - SM_b20466 0.41 +0.1 478,842 + SM_b20466 0.46 +1.1 478,986 + SM_b20466 0.58 +0.1 478,986 + SM_b20466 0.58 +0.5 478,987 - SM_b20466 0.58 +0.6 478,987 - SM_b20466 0.58 +0.5 478,987 - SM_b20466 0.58 +0.5 478,987 - SM_b20466 0.58 -0.1 479,041 - SM_b20466 0.63 +0.6 479,126 + SM_b20466 0.70 +0.1 479,127 - SM_b20466 0.71 -0.8 479,127 - SM_b20466 0.71 -0.6
Or see this region's nucleotide sequence