Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20434 and SM_b20435 are separated by 19 nucleotides SM_b20435 and SM_b20436 are separated by 397 nucleotides
SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565
_b20434
SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580
_b20435
SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252
_b20436
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 448.628 kb on - strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.808 kb on + strand, within SM_b20434 at 448.885 kb on + strand, within SM_b20434 at 448.985 kb on - strand, within SM_b20434 at 448.995 kb on + strand, within SM_b20434 at 449.143 kb on + strand, within SM_b20434 at 449.144 kb on - strand, within SM_b20434 at 449.235 kb on + strand, within SM_b20434 at 449.317 kb on + strand, within SM_b20434 at 449.318 kb on - strand, within SM_b20434 at 449.366 kb on - strand, within SM_b20434 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.858 kb on + strand, within SM_b20435 at 449.966 kb on + strand, within SM_b20435 at 450.294 kb on + strand, within SM_b20435 at 450.338 kb on - strand, within SM_b20435 at 450.438 kb on + strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.517 kb on + strand at 450.648 kb on + strand at 450.808 kb on - strand at 450.974 kb on + strand at 450.974 kb on + strand at 450.974 kb on + strand at 450.974 kb on + strand at 450.975 kb on - strand at 450.975 kb on - strand at 450.975 kb on - strand at 451.008 kb on + strand at 451.008 kb on + strand at 451.008 kb on + strand at 451.009 kb on - strand at 451.009 kb on - strand at 451.010 kb on + strand at 451.011 kb on - strand at 451.011 kb on - strand at 451.072 kb on + strand at 451.105 kb on + strand at 451.106 kb on - strand, within SM_b20436 at 451.106 kb on - strand, within SM_b20436 at 451.212 kb on + strand, within SM_b20436 at 451.279 kb on - strand, within SM_b20436 at 451.283 kb on + strand, within SM_b20436 at 451.283 kb on + strand, within SM_b20436 at 451.283 kb on + strand, within SM_b20436 at 451.283 kb on + strand, within SM_b20436 at 451.284 kb on - strand, within SM_b20436 at 451.284 kb on - strand, within SM_b20436 at 451.359 kb on + strand, within SM_b20436 at 451.360 kb on - strand, within SM_b20436
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 448,628 - SM_b20434 0.21 +0.1 448,666 + SM_b20434 0.24 -1.8 448,666 + SM_b20434 0.24 -2.7 448,699 + SM_b20434 0.27 +0.4 448,699 + SM_b20434 0.27 -2.5 448,700 - SM_b20434 0.27 +1.5 448,700 - SM_b20434 0.27 +0.5 448,765 + SM_b20434 0.32 -2.0 448,765 + SM_b20434 0.32 +3.6 448,765 + SM_b20434 0.32 -2.5 448,765 + SM_b20434 0.32 -0.1 448,766 - SM_b20434 0.32 +0.4 448,766 - SM_b20434 0.32 -0.9 448,766 - SM_b20434 0.32 +0.0 448,808 + SM_b20434 0.36 -0.6 448,885 + SM_b20434 0.42 +2.4 448,985 - SM_b20434 0.51 +1.0 448,995 + SM_b20434 0.52 -1.1 449,143 + SM_b20434 0.64 +3.5 449,144 - SM_b20434 0.64 +0.6 449,235 + SM_b20434 0.72 +0.2 449,317 + SM_b20434 0.79 +1.0 449,318 - SM_b20434 0.79 -1.0 449,366 - SM_b20434 0.83 -0.0 449,768 + SM_b20435 0.18 -3.2 449,768 + SM_b20435 0.18 -1.3 449,768 + SM_b20435 0.18 -0.5 449,858 + SM_b20435 0.27 -0.5 449,966 + SM_b20435 0.38 -1.3 450,294 + SM_b20435 0.71 +0.6 450,338 - SM_b20435 0.76 -2.2 450,438 + SM_b20435 0.86 +0.8 450,439 - SM_b20435 0.86 -0.2 450,439 - SM_b20435 0.86 -0.4 450,517 + -2.2 450,648 + -1.6 450,808 - -1.1 450,974 + -0.1 450,974 + -3.1 450,974 + -2.3 450,974 + -2.9 450,975 - -2.1 450,975 - -0.2 450,975 - +0.2 451,008 + +0.7 451,008 + -0.3 451,008 + +1.7 451,009 - +0.0 451,009 - -3.1 451,010 + +1.6 451,011 - -2.6 451,011 - -0.2 451,072 + -0.4 451,105 + +0.1 451,106 - SM_b20436 0.10 +0.3 451,106 - SM_b20436 0.10 -0.4 451,212 + SM_b20436 0.18 +0.3 451,279 - SM_b20436 0.24 +0.4 451,283 + SM_b20436 0.24 -1.0 451,283 + SM_b20436 0.24 +0.6 451,283 + SM_b20436 0.24 +0.7 451,283 + SM_b20436 0.24 -0.4 451,284 - SM_b20436 0.24 +0.4 451,284 - SM_b20436 0.24 -0.2 451,359 + SM_b20436 0.30 +1.2 451,360 - SM_b20436 0.30 +0.2
Or see this region's nucleotide sequence