Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20342 and SM_b20343 are separated by 1 nucleotides SM_b20343 and SM_b20344 are separated by 276 nucleotides
SM_b20342: SM_b20342 - isoquinoline 1-oxidoreductase, at 346,305 to 348,518
_b20342
SM_b20343: SM_b20343 - isoquinoline 1-oxidoreductase, at 348,520 to 348,978
_b20343
SM_b20344: SM_b20344 - transcriptional regulator, at 349,255 to 350,211
_b20344
Position (kb) 348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.569 kb on + strand, within SM_b20342 at 347.827 kb on + strand, within SM_b20342 at 347.828 kb on - strand at 347.828 kb on - strand, within SM_b20342 at 347.889 kb on - strand, within SM_b20342 at 348.172 kb on + strand, within SM_b20342 at 348.173 kb on - strand, within SM_b20342 at 348.182 kb on + strand, within SM_b20342 at 348.260 kb on + strand, within SM_b20342 at 348.262 kb on + strand, within SM_b20342 at 348.263 kb on - strand, within SM_b20342 at 348.513 kb on + strand at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.572 kb on + strand, within SM_b20343 at 348.728 kb on - strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.833 kb on + strand, within SM_b20343 at 348.940 kb on + strand at 348.941 kb on - strand at 348.966 kb on + strand at 348.966 kb on + strand at 349.127 kb on + strand at 349.128 kb on - strand at 349.153 kb on + strand at 349.154 kb on - strand at 349.154 kb on - strand at 349.177 kb on - strand at 349.196 kb on + strand at 349.197 kb on - strand at 349.207 kb on - strand at 349.521 kb on + strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.583 kb on - strand, within SM_b20344 at 349.689 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.822 kb on + strand, within SM_b20344 at 349.823 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.887 kb on - strand, within SM_b20344 at 349.968 kb on - strand, within SM_b20344
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 347,569 + SM_b20342 0.57 -1.0 347,827 + SM_b20342 0.69 -0.2 347,828 - +2.1 347,828 - SM_b20342 0.69 -1.6 347,889 - SM_b20342 0.72 +1.4 348,172 + SM_b20342 0.84 +1.1 348,173 - SM_b20342 0.84 +0.3 348,182 + SM_b20342 0.85 +2.5 348,260 + SM_b20342 0.88 +1.3 348,262 + SM_b20342 0.88 +2.4 348,263 - SM_b20342 0.88 -1.0 348,513 + +3.4 348,572 + SM_b20343 0.11 -0.2 348,572 + SM_b20343 0.11 -2.9 348,572 + SM_b20343 0.11 -0.8 348,728 - SM_b20343 0.45 +0.4 348,833 + SM_b20343 0.68 -0.2 348,833 + SM_b20343 0.68 -2.0 348,940 + -0.0 348,941 - +0.5 348,966 + -1.3 348,966 + +1.1 349,127 + -0.8 349,128 - -3.3 349,153 + -3.3 349,154 - -2.4 349,154 - -2.9 349,177 - -1.4 349,196 + +1.6 349,197 - +0.4 349,207 - +0.4 349,521 + SM_b20344 0.28 +0.9 349,583 - SM_b20344 0.34 +1.1 349,583 - SM_b20344 0.34 +1.9 349,583 - SM_b20344 0.34 +0.0 349,689 + SM_b20344 0.45 -0.5 349,822 + SM_b20344 0.59 +0.0 349,822 + SM_b20344 0.59 +0.3 349,822 + SM_b20344 0.59 +0.1 349,822 + SM_b20344 0.59 -1.9 349,823 - SM_b20344 0.59 +2.3 349,887 - SM_b20344 0.66 +1.2 349,887 - SM_b20344 0.66 -1.3 349,887 - SM_b20344 0.66 +2.0 349,968 - SM_b20344 0.75 +0.8
Or see this region's nucleotide sequence