Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20262 and SM_b20263 are separated by 186 nucleotides SM_b20263 and SM_b20264 are separated by 66 nucleotides SM_b20264 and SM_b20265 are separated by 12 nucleotides
SM_b20262: SM_b20262 - semialdehyde dehydrogenase, at 266,814 to 268,331
_b20262
SM_b20263: SM_b20263 - amino acid ABC transporter substrate-binding protein, at 268,518 to 269,324
_b20263
SM_b20264: SM_b20264 - amino acid ABC transporter permease, at 269,391 to 270,056
_b20264
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 268.079 kb on + strand, within SM_b20262 at 268.439 kb on + strand at 268.439 kb on + strand at 268.468 kb on + strand at 268.469 kb on - strand at 268.698 kb on + strand, within SM_b20263 at 268.860 kb on + strand, within SM_b20263 at 268.861 kb on - strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.960 kb on - strand, within SM_b20263 at 269.019 kb on + strand, within SM_b20263 at 269.081 kb on + strand at 269.196 kb on + strand, within SM_b20263 at 269.400 kb on + strand at 269.400 kb on + strand at 269.400 kb on + strand at 269.401 kb on - strand at 269.614 kb on - strand, within SM_b20264 at 269.614 kb on - strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.664 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.989 kb on - strand, within SM_b20264 at 269.991 kb on + strand at 269.992 kb on - strand at 270.214 kb on - strand, within SM_b20265
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 268,079 + SM_b20262 0.83 +0.2 268,439 + -1.6 268,439 + -1.8 268,468 + +1.0 268,469 - +0.3 268,698 + SM_b20263 0.22 -0.1 268,860 + SM_b20263 0.42 -0.6 268,861 - SM_b20263 0.43 +1.9 268,959 + SM_b20263 0.55 +0.6 268,959 + SM_b20263 0.55 -0.3 268,959 + SM_b20263 0.55 +0.2 268,959 + SM_b20263 0.55 +1.0 268,960 - SM_b20263 0.55 +2.0 269,019 + SM_b20263 0.62 +0.8 269,081 + +0.1 269,196 + SM_b20263 0.84 +0.6 269,400 + -0.6 269,400 + +1.2 269,400 + +1.0 269,401 - -0.4 269,614 - SM_b20264 0.33 +0.9 269,614 - SM_b20264 0.33 +1.4 269,661 + SM_b20264 0.41 +0.2 269,661 + SM_b20264 0.41 +0.2 269,663 + SM_b20264 0.41 -0.0 269,663 + SM_b20264 0.41 +0.1 269,664 - SM_b20264 0.41 +0.3 269,704 - SM_b20264 0.47 +0.3 269,704 - SM_b20264 0.47 +2.8 269,988 + SM_b20264 0.90 +0.5 269,988 + SM_b20264 0.90 -2.0 269,989 - SM_b20264 0.90 +2.1 269,991 + +0.2 269,992 - +0.5 270,214 - SM_b20265 0.22 -0.1
Or see this region's nucleotide sequence