Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20138 and SM_b20139 are separated by 311 nucleotides SM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20140 and SM_b20141 overlap by 1 nucleotides
SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102
_b20138
SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908
_b20139
SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809
_b20140
SM_b20141: SM_b20141 - oligopeptide ABC transporter ATP-binding protein, at 154,809 to 156,455
_b20141
Position (kb) 153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 152.478 kb on - strand, within SM_b20138 at 152.478 kb on - strand, within SM_b20138 at 152.523 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.616 kb on - strand, within SM_b20138 at 152.711 kb on + strand, within SM_b20138 at 152.754 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.802 kb on - strand, within SM_b20138 at 152.813 kb on + strand at 152.876 kb on + strand, within SM_b20138 at 152.876 kb on + strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.877 kb on - strand, within SM_b20138 at 152.924 kb on + strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.925 kb on - strand, within SM_b20138 at 152.990 kb on + strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.991 kb on - strand, within SM_b20138 at 152.993 kb on + strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 152.994 kb on - strand, within SM_b20138 at 153.087 kb on + strand at 153.258 kb on + strand at 153.268 kb on + strand at 153.268 kb on + strand at 153.271 kb on + strand at 153.272 kb on - strand at 153.290 kb on + strand at 153.290 kb on + strand at 153.291 kb on - strand at 153.587 kb on + strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.588 kb on - strand, within SM_b20139 at 153.698 kb on + strand, within SM_b20139 at 153.887 kb on + strand at 154.100 kb on + strand, within SM_b20140 at 154.101 kb on - strand, within SM_b20140 at 154.256 kb on + strand, within SM_b20140 at 154.296 kb on - strand, within SM_b20140 at 154.344 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.415 kb on + strand, within SM_b20140 at 154.416 kb on - strand, within SM_b20140 at 154.421 kb on + strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.422 kb on - strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.698 kb on + strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.699 kb on - strand, within SM_b20140 at 154.749 kb on - strand at 154.863 kb on + strand at 154.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 152,478 - SM_b20138 0.33 -0.0 152,478 - SM_b20138 0.33 +0.0 152,523 - SM_b20138 0.37 -0.5 152,616 - SM_b20138 0.47 +0.8 152,616 - SM_b20138 0.47 -0.3 152,711 + SM_b20138 0.58 +0.1 152,754 - SM_b20138 0.62 +0.8 152,802 - SM_b20138 0.68 +0.4 152,802 - SM_b20138 0.68 -1.5 152,813 + -1.9 152,876 + SM_b20138 0.76 +1.5 152,876 + SM_b20138 0.76 +0.4 152,877 - SM_b20138 0.76 -0.4 152,877 - SM_b20138 0.76 +0.9 152,877 - SM_b20138 0.76 -0.2 152,877 - SM_b20138 0.76 +1.7 152,924 + SM_b20138 0.81 -1.5 152,925 - SM_b20138 0.81 +0.6 152,925 - SM_b20138 0.81 +1.2 152,925 - SM_b20138 0.81 +0.1 152,990 + SM_b20138 0.88 -0.5 152,991 - SM_b20138 0.88 -2.7 152,991 - SM_b20138 0.88 -0.2 152,991 - SM_b20138 0.88 +2.9 152,991 - SM_b20138 0.88 -2.6 152,993 + SM_b20138 0.88 -0.2 152,994 - SM_b20138 0.88 -2.2 152,994 - SM_b20138 0.88 -0.1 152,994 - SM_b20138 0.88 -3.4 153,087 + -0.5 153,258 + -1.3 153,268 + -2.1 153,268 + +0.0 153,271 + +0.9 153,272 - +2.1 153,290 + -1.7 153,290 + +1.4 153,291 - -0.7 153,587 + SM_b20139 0.35 -0.9 153,588 - SM_b20139 0.35 +0.1 153,588 - SM_b20139 0.35 -1.6 153,588 - SM_b20139 0.35 +1.3 153,698 + SM_b20139 0.57 +1.4 153,887 + -1.5 154,100 + SM_b20140 0.20 +0.2 154,101 - SM_b20140 0.20 +0.5 154,256 + SM_b20140 0.37 +0.5 154,296 - SM_b20140 0.42 +0.6 154,344 + SM_b20140 0.47 +1.2 154,415 + SM_b20140 0.55 +0.2 154,415 + SM_b20140 0.55 +0.5 154,415 + SM_b20140 0.55 +0.8 154,416 - SM_b20140 0.55 -0.5 154,421 + SM_b20140 0.56 +0.3 154,422 - SM_b20140 0.56 +0.0 154,422 - SM_b20140 0.56 +3.7 154,422 - SM_b20140 0.56 +1.0 154,698 + SM_b20140 0.87 -0.4 154,698 + SM_b20140 0.87 -0.2 154,699 - SM_b20140 0.87 -2.5 154,699 - SM_b20140 0.87 +0.8 154,699 - SM_b20140 0.87 +0.4 154,749 - -0.5 154,863 + +1.5 154,864 - -0.1
Or see this region's nucleotide sequence